Locus 5137

Sequence ID 3L_DroMel_CAF1
Location 14,121,654 – 14,121,763
Length 109
Max. P 0.799114
window8130

overview

Window 0

Location 14,121,654 – 14,121,763
Length 109
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.11
Mean single sequence MFE -30.21
Consensus MFE -23.16
Energy contribution -23.11
Covariance contribution -0.05
Combinations/Pair 1.24
Mean z-score -2.46
Structure conservation index 0.77
SVM decision value 0.61
SVM RNA-class probability 0.799114
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14121654 109 - 23771897
GACGCGUAAAAAUAACGCUUUUCUGAGCCCCA--CAACAUCAUCAGA----AACAC--GAACAAUGGUCAAAC--AAGAGGAUGGGAAUCCGG-AGGAUCCAUCCUCUCCAAAGCACAUU
(((((((.......)))).(((((((......--........)))))----))...--........)))....--.(((((((((..((((..-.)))))))))))))............ ( -29.24)
>DroSec_CAF1 119839 109 - 1
GACGCGUAAAAAUAACGCUUUUCUGAGCCCCA--CAACAUCAUCAGA----AACUC--GAACAAAGGUCAAAC--AAGAGGAUGGGAAUCCGG-AGGAUCCAUCCUCUCCACAGCACAUU
(((((((.......)))).(((((((......--........)))))----))...--........)))....--.(((((((((..((((..-.)))))))))))))............ ( -29.24)
>DroSim_CAF1 121490 109 - 1
GACGCGUAAAAAUAACGCUUUUCUGAGCCCCA--CAACAUCAUCAGA----AACUC--GAACAAAGGUCAAAC--AAGAGGAUGGGAAUCCGG-AGGAUCCAUCCUCUCCACAGCAAAUU
(((((((.......)))).(((((((......--........)))))----))...--........)))....--.(((((((((..((((..-.)))))))))))))............ ( -29.24)
>DroEre_CAF1 118991 108 - 1
GACGCGUAAAAAUAACGCG-UUCUGAGCCCCA--CAACAUCAUCAGG----AAUAC--GAACAAAGGUCAAAC--AAGAGGAUGGGAAUCCGG-AGGAUCCAUCCUCUCCAAAGCACAUU
(((((((.......)))).-((((((......--........)))))----)....--........)))....--.(((((((((..((((..-.)))))))))))))............ ( -28.64)
>DroYak_CAF1 124421 112 - 1
GACGCGUAAAAAUAACGCG-UUCUAAGCCCCACACAACAACAUGAGG----UACUCGGGAACAAAGGUCAAAC--AAGAGGAUGGGAAUCCGG-AGGAUCCAUGCUCUCCAAAGCACAUU
(((((((.......))))(-((((.((..((.((........)).))----..))..)))))....)))....--.((((.((((..((((..-.)))))))).))))............ ( -27.90)
>DroAna_CAF1 120089 113 - 1
GACGCGUAAAAA--ACGCG-UUAUAAGCCCUG--UGGCGUUGGCGUAUUCACAGUC--GAACAAAGGACCUGCCAAAGAGGAUGGGGCUGUGGAAGGAUUUAUCCUCUCCAAAGCACAUU
(((((((.....--)))))-))...(((((((--(..(.(((((((....)).(((--........)))..))))).)...)))))))).((((((((....)))).))))......... ( -37.00)
>consensus
GACGCGUAAAAAUAACGCG_UUCUGAGCCCCA__CAACAUCAUCAGA____AACUC__GAACAAAGGUCAAAC__AAGAGGAUGGGAAUCCGG_AGGAUCCAUCCUCUCCAAAGCACAUU
(((((((.......))))...(((((................)))))...................))).......((((((((((..(((....)))))))))))))............ (-23.16 = -23.11 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:47 2006