| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,121,489 – 14,121,588 |
| Length | 99 |
| Max. P | 0.697204 |
| Location | 14,121,489 – 14,121,588 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 92.38 |
| Mean single sequence MFE | -27.55 |
| Consensus MFE | -25.07 |
| Energy contribution | -25.16 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697204 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14121489 99 + 23771897 GCCACUUGAGUUUUGAAAACGAUUUGGCAACAGG-------AGAGAUGUGAGAUGGCGCCAAGCGGAAACGGAUAUGCCAAAGCAUGUGGAAACAUUUGCCAAUGC--- ((((((((.(((((........((((....))))-------.))))).)))).))))((....((....)).....))....(((.(((....))).)))......--- ( -23.60) >DroSec_CAF1 119674 99 + 1 GCCACUUGAGUUUUGAAAACGAUUUGGCAACAGG-------AGAGAUGUGAGGUGGCGCCAAGCGGAAACGGAAAUGCCAAAGCAUGUGGAAACAUUUGCCAAUGC--- (((((((.((((.....)))..((((....))))-------.......).)))))))((....((....)).....))....(((.(((....))).)))......--- ( -26.40) >DroSim_CAF1 121325 99 + 1 GCCACUUGAGUUUUGAAAACGAUUUGGCAACAGG-------AGAGAUGUGAGAUGGCGCCAAGCGGAAACGGAAAUGCCAAAGCAUGUGGAAACAUUUGCCAAUGC--- ((((((((.(((((........((((....))))-------.))))).)))).))))((....((....)).....))....(((.(((....))).)))......--- ( -23.60) >DroEre_CAF1 118826 99 + 1 GCCACUUGAGUUUUGAAAACGAUUCGGCAACAGG-------AGAGAUGCGAGUUGGCGCCAAGCGGAAACGGAAAUGCCAAAGCAUGUGGAAACAUUUGCCAAUGC--- .......(((((.(....).)))))(((((....-------....((((...((((((.....((....))....)))))).))))(((....)))))))).....--- ( -29.10) >DroYak_CAF1 124243 102 + 1 GCCUCUUGAGUUUUGAAAACGAUUCGGCAACGGG-------AGAGAUGUGAGAUGGCGCCAAGCGGAAACGGAAAUGCCAAAGCAUGUGGAAACAUUUGCCAAUGCUGC ((((((((((((.(....).)))))(....)..)-------))))........(((((.....((....))....)))))..(((.(((....))).)))....))... ( -27.50) >DroAna_CAF1 119913 106 + 1 GCCACUUGAGUUUUGAAAACGAUUUGGUAACAGGAUUUGCCAGAGAUUCUAGGUGGCGCCAAGCGGAAACGGAAAUGCCAAAGCAUGUGGAAACAUUGGCCAAUGU--- (((((((((((((((....)))((((((((......))))))))))))).)))))))(((((.((....))...((((....)))).((....)))))))......--- ( -35.10) >consensus GCCACUUGAGUUUUGAAAACGAUUUGGCAACAGG_______AGAGAUGUGAGAUGGCGCCAAGCGGAAACGGAAAUGCCAAAGCAUGUGGAAACAUUUGCCAAUGC___ ((((((((.(((((........((((....))))........))))).)))).))))......((....)).....((....(((.(((....))).)))....))... (-25.07 = -25.16 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:46 2006