| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,121,309 – 14,121,417 |
| Length | 108 |
| Max. P | 0.532697 |
| Location | 14,121,309 – 14,121,417 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.55 |
| Mean single sequence MFE | -33.72 |
| Consensus MFE | -23.88 |
| Energy contribution | -25.03 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532697 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14121309 108 - 23771897 UGCUUCCCAGCCCACAUUCUGUUGCCAAGGCCUUCUAAUUGCUCUAAAUGCUCGGUGGUCUCUGGGCUCCAUUCCGUUUUCGAUUUGGGUUUGCCUAGGUGGCUGGCA------------ ......((((((.((............(((((..((....((.......))..)).)))))((((((((((...((....))...))))...))))))))))))))..------------ ( -32.00) >DroSec_CAF1 119494 108 - 1 UGCUUCCCAGCCCACAUUCUGUUGCCAAGGCCUUUUAAUUGCUCUAAAUGCUCAGUGGGCUCUGGGCUCCAUUCCGUUUUCGAUUUGGGCUUGCCUAGGUGGCUGGCA------------ .(((..(((((((((........((....)).........((.......))...))))))(((((((((((...((....))...))))...))))))))))..))).------------ ( -35.80) >DroSim_CAF1 121145 108 - 1 UGCUUCCCAGCCCACAUUCUGUUGCCAAGGCCUUCUAAUUGCUCUAAAUGCUCGGUGGGCUCUGGGCUCCAUUCCGUUUUCGAUUUGGGCUUGCCUAGGUGGCUGGCA------------ .(((..(((((((((........((....)).........((.......))...))))))(((((((((((...((....))...))))...))))))))))..))).------------ ( -35.60) >DroEre_CAF1 118646 108 - 1 UGCUACCCAGCCCACAUUCUGUUGCCAAGGCCUUCUAAUUGCUCUAAAUGCUCGGUGGGCUCUCGGCUCCAUUCCGUUUUCGAUUUGGGCUUGCCUAGGUGGCUGGCA------------ .(((((((((((((.....((..(((.((((((.((....((.......))..)).)))).)).)))..))...((....))...))))).))....)))))).....------------ ( -33.10) >DroYak_CAF1 124050 103 - 1 CGCCACCCAGCCCACAUUCUGUUGCCAAGGCCUUCUAAUUGCUCUAAAUGCUCGGUGGGCUCUGGGCUC-----UGAUUUCGAUUCGGGUUUGCCUAGGUGGCUGGCA------------ .((((.(((((((((........((....)).........((.......))...))))))(((((((((-----(((.......)))))...)))))))))).)))).------------ ( -38.50) >DroAna_CAF1 119729 107 - 1 CUCCACCCAG----AAGCCGGUUGCCAAGGCCUUCUAAUUGCUCCAAAUGUGCGUCG-------GGUUUCGUUUCGUUUUCGAUUUGGAUUUGG--ACCUGCCUGGCAUUGUUUUUAAAU ........((----((((....(((((.(((..(((((....((((((((.(((.((-------.....))...)))...).))))))).))))--)...))))))))..)))))).... ( -27.30) >consensus UGCUACCCAGCCCACAUUCUGUUGCCAAGGCCUUCUAAUUGCUCUAAAUGCUCGGUGGGCUCUGGGCUCCAUUCCGUUUUCGAUUUGGGCUUGCCUAGGUGGCUGGCA____________ .(((..(((((((((........((....)).........((.......))...))))))(((((((((((...((....))...))))...))))))))))..)))............. (-23.88 = -25.03 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:45 2006