Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,118,827 – 14,118,921 |
Length | 94 |
Max. P | 0.961150 |
Location | 14,118,827 – 14,118,921 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 77.76 |
Mean single sequence MFE | -30.55 |
Consensus MFE | -17.97 |
Energy contribution | -19.42 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.08 |
Mean z-score | -2.38 |
Structure conservation index | 0.59 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.961150 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14118827 94 - 23771897 CGAUUAGCGCUUCUUCUGGCUGAUUUCUUGGCUUG-CCUCUCGGGCUCUGUGAAAAUUCCAUGGAAAUUUCACACAUCCUUGCGAGGGCGGGGAU .(((((((.(.......))))))))......((((-((.((((((...(((((((.(((....))).)))))))...))...))))))))))... ( -31.20) >DroPse_CAF1 133263 95 - 1 CGAUUAGCGCUUGUGCGCGCUGAUUUCUCAGUCGGGUCUCUGUCUCUCUGUGAAAAUUCUAUGGAAAUUUCACACAUUUGUGCGAGGGCGGGGAU .(((((((((......)))))))))..........(((((((((.(((.((((((.(((....))).))))))((....))..)))))))))))) ( -34.50) >DroEre_CAF1 116229 79 - 1 CGAUUAGCGCUUCUUCUAGCUGAUUUCUUCA----------------CUGUGAAAAUUCCAUGGAAAAUUCACACAUCCUUGCGAGGGCGGGGAU .(((((((..........)))))))......----------------.((((((..(((....)))..)))))).((((((((....)))))))) ( -23.40) >DroYak_CAF1 121222 95 - 1 CGAUUAGCGCUUCUUCUGGCUGAUUUCUUCGCUUGGCCUUUGGGUCUCUGUGAAAAUUCCAUGGAAAUUUCACACAUCCUUGCGAGGGCGGAGAU .(((((((.(.......))))))))(((((((((.((....((((...(((((((.(((....))).))))))).))))..))..))))))))). ( -32.80) >DroAna_CAF1 117619 81 - 1 CGAUUAGCGCAACUCC------------UCGCUCG-CCUUUCG-CCUCUGUGAAAAUUCCUUGGAAAUUUCACACAUCCUUGCGAGGGCGGGGAU .............(((------------((((((.-....(((-(...(((((((.(((....))).))))))).......))))))))))))). ( -26.90) >DroPer_CAF1 134553 95 - 1 CGAUUAGCGCUUGUGCGCGCUGAUUUCUCAGUCCGGUCUCUGUCUCUCUGUGAAAAUUCUAUGGAAAUUUCACACAUUUGUGCGAGGGCGGGGAU .(((((((((......)))))))))..........(((((((((.(((.((((((.(((....))).))))))((....))..)))))))))))) ( -34.50) >consensus CGAUUAGCGCUUCUUCUCGCUGAUUUCUUCGCUCG_CCUCUGG_UCUCUGUGAAAAUUCCAUGGAAAUUUCACACAUCCUUGCGAGGGCGGGGAU .(((((((..........))))))).......................(((((((.(((....))).))))))).((((((((....)))))))) (-17.97 = -19.42 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:44 2006