| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,117,812 – 14,117,903 |
| Length | 91 |
| Max. P | 0.653892 |
| Location | 14,117,812 – 14,117,903 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 78.89 |
| Mean single sequence MFE | -24.28 |
| Consensus MFE | -11.89 |
| Energy contribution | -12.08 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653892 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14117812 91 + 23771897 UCUAUUCCAUGUGCAAAUUUGUUUAUUGGUAA--------AUCUGUGCAGAGAUGCAUUGAU-------UGUCUACCAAAUGUCAGAUUAGAUCAGCGUGGAACAU-- ....((((((((.(.((((((....(((((((--------(((.(((((....))))).)))-------)...))))))....)))))).)....))))))))...-- ( -28.50) >DroVir_CAF1 116249 97 + 1 CAUUUUCUUCGUACAAAUUUGUUUAUUGGGAA--------AUCUGUGCAGCGAUGCAUUUAUCUGUCUGUGUCUGCCAAAUGUCAGAUUAGAUCAACGUUGAC-AA-- .(((((((....(((....))).....)))))--------)).(((.(((((.((.(((((((((.(..((.....))...).)))).))))))).)))))))-).-- ( -19.50) >DroPse_CAF1 131918 91 + 1 UCUAUUCCAUGUGCAAAUUUGUUUAUUGGAAA--------AUCUGUGCAGCGAUGCAUUGAU-------UGUCUACCAAAUGUCAGAUUAGAUCAGCAUGGGAUAU-- ..((((((((((.(.((((((....((((..(--------(((.(((((....))))).)))-------).....))))....)))))).)....)))))))))).-- ( -28.10) >DroWil_CAF1 146079 99 + 1 UCUAUUCCAUGUGCAAAUUUGUUUAUUGGAAAAUAUCUGAAUCUGUGCAACGAUGCAUUGAU-----UUUGUCUGCCAAAUGUCAGAUUAGAUCACU--CAAAUAU-- ....(((((...(((....)))....))))).((((.(((....(((((....)))))((((-----((.(((((.(....).))))).)))))).)--)).))))-- ( -21.10) >DroMoj_CAF1 127858 97 + 1 UAUAUGGCUCGCACAAAUUUGUUUAUUGGAAA--------AUCUGUGCAGCGAUGCAUCAAUCUGUCUGUGUUCGCCAAAUGUCAGAUUAGAUCAACGUUGAC-AU-- ...(((....(((((.((((..........))--------)).)))))((((.((.(((((((((.(..((.....))...).)))))).))))).))))..)-))-- ( -21.00) >DroAna_CAF1 116685 93 + 1 UCUGUUCCAUGUGCAAAUUUGUUUAUUGGAAA--------AUCUGUGCAGCGAUGCAUUGGU-------UGUCUACCAAAUGUCAGAUUAGAUCAGCAUGGGAUAUGA ..((((((((((.(.((((((....((((..(--------(((.(((((....))))).)))-------).....))))....)))))).)....))))))))))... ( -27.50) >consensus UCUAUUCCAUGUGCAAAUUUGUUUAUUGGAAA________AUCUGUGCAGCGAUGCAUUGAU_______UGUCUACCAAAUGUCAGAUUAGAUCAGCGUGGAAUAU__ ...............((((((....((((...........(((.(((((....))))).))).............))))....))))))................... (-11.89 = -12.08 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:43 2006