| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,115,359 – 14,115,449 |
| Length | 90 |
| Max. P | 0.837024 |
| Location | 14,115,359 – 14,115,449 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.03 |
| Mean single sequence MFE | -22.88 |
| Consensus MFE | -15.84 |
| Energy contribution | -17.03 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.837024 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14115359 90 + 23771897 UACCUGUU-UC-------------------UCUG---------UUGGCAUUGUCUUG-GCUUUAACUACCUUUUAUUUGGGAAUUUCCCAAAACAAAUGAAAAUAAAGUGCAAGGCUCAA ....((((-..-------------------....---------..))))..((((((-((((((...........((((((.....))))))...........)))))).)))))).... ( -18.45) >DroVir_CAF1 114163 85 + 1 UACCUGUU------------------------GG---------CUGGCAUUGUCU-G-GCCUUAACUAUCUUUUAUUUGGGAAAUUCCCAAAACAAAUGAAAAUAAAGUGAAACGCACAA ....((((------------------------((---------(..(......).-.-)))...............(((((.....)))))))))............(((.....))).. ( -17.20) >DroPse_CAF1 129243 108 + 1 -ACCUGUU-UUGUAUGUGCGUUUGCGUGUGUGUG---------CUGGCAUUGUCUUG-GCUUUAACUACCUUUUAUUUGGGAAUUUCCCAAAACAAAUGAAAAUAAAGUGCAAGGCACAA -...((((-..(((((..((......))..))))---------).)))).(((((((-((((((...........((((((.....))))))...........)))))).)))))))... ( -26.85) >DroWil_CAF1 142959 91 + 1 UACCUGUGUGU-------------------UUUG---------UUGGCAUUGUCUUG-GCUUUAACUACCUUUUAUUUGGGAAAUUCCCAAAACAAAUGAAAAUAAAGUGAAACGCACAA ....(((((((-------------------((..---------(((.((......))-.)...............((((((.....))))))..............))..))))))))). ( -22.40) >DroAna_CAF1 114379 98 + 1 UACCUGUU-UU-------------------ACGGAUGGGUGUAUGGGUAUUGUCUUG-GCU-UAACUACCUUUUAUUUGGGAAUUUCCCAAAACAAAUGAAAAUAAAGUGCAGGGCACAA (((((((.-.(-------------------((......))).))))))).(((((((-(((-(............((((((.....))))))....((....)).)))).)))))))... ( -23.50) >DroPer_CAF1 130330 109 + 1 -ACCUGUU-UUGUAUGUGCGUGUGCGUGUGUGUG---------UUGGCAUUGUCUUGGGCUUUAACUACUUUUUAUUUGGGAAUUUCCCAAAACAAAUGAAAAUAAAGUGCAAGGCACAA -...((((-.(..(((..((....))..)))..)---------..)))).(((((((.((((((...........((((((.....))))))...........)))))).)))))))... ( -28.85) >consensus UACCUGUU_UU___________________UCUG_________UUGGCAUUGUCUUG_GCUUUAACUACCUUUUAUUUGGGAAUUUCCCAAAACAAAUGAAAAUAAAGUGCAAGGCACAA ..................................................(((((((.((((((...........((((((.....))))))...........)))))).)))))))... (-15.84 = -17.03 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:42 2006