| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,114,676 – 14,114,784 |
| Length | 108 |
| Max. P | 0.726679 |
| Location | 14,114,676 – 14,114,784 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 82.01 |
| Mean single sequence MFE | -22.45 |
| Consensus MFE | -18.77 |
| Energy contribution | -18.92 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.726679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14114676 108 + 23771897 UGAAAAUGGUUUUGAAUUCGAUUUGGAUCUCAUAAAUCAUUUUAUUGAACUUUAACCCAUUGCCAAAGAAACUGAACUUUCGUUUUGUUUAUGAGGGUUUGGAAAAAA ((..(((((..(((((((((((...(((.......))).....)))))).))))).)))))..))......(..(((((((((.......)))))))))..)...... ( -21.60) >DroSec_CAF1 112935 104 + 1 UGAAAAUGGUUUUGAAUUCGAUUUGGAUCUCAUAAAUCAUUUUAUUGAACUUUAACCCAUAGCUU---GAACUGAACUUUCGUUUUGUUUAUGAGGGCUUGGAAA-AA ..(((((((((((((..((......))..))).)))))))))).............(((.(((((---((((.((((....)))).)))))....)))))))...-.. ( -21.30) >DroSim_CAF1 114579 107 + 1 UGAAAAUGGUUUUGAAUUCGAUUUGGAUCUCAUAAAUCAUUUUAUUGAACUUUAACCCAUUGCCUUUAAAACUGAACUUUCGUUUUGUUUAUGAGGGUUUGGAAU-AA ..(((((((((((((..((......))..))).)))))))))).............(((..(((((((((((.((((....)))).)))).))))))).)))...-.. ( -25.00) >DroEre_CAF1 111986 107 + 1 UGAAAAUGGUUUUGAAUUCGAUUUGGAUCUCAUAAAUCAUUUUAUUGAACUUUAACCCAAUGCCGAUGAAACUGAACUUUCAUUUUGGUUAUGAGAGUUUAGGAA-AU ..(((((((((((((..((......))..))).))))))))))............................((((((((((((.......))))))))))))...-.. ( -23.70) >DroYak_CAF1 116965 107 + 1 UGAAAAUGGUUUUGAAUUCGAUUUGGAACUCAUAAAUCAUUUUAUUGAACUUUAACCCGUCGCCUAUGAAACUGAACUUUUAUUUUGGUUAUGAGAGUUCAGGAA-UU ..(((((((((((((.(((......))).))).))))))))))............................((((((((((((.......))))))))))))...-.. ( -24.40) >DroAna_CAF1 113836 92 + 1 UGGAAAUGGUUUUGAAUUCAACGAGGAUCUCAUAAAUCAUUC--UUGAACUUUAACCCAUUGGCGA----CCCAGAUUUUCGUU--------GAGCGUUUA--AUAAU ...........((((((((((((((((((.......(((...--.)))............(((...----.)))))))))))))--------))..)))))--).... ( -18.70) >consensus UGAAAAUGGUUUUGAAUUCGAUUUGGAUCUCAUAAAUCAUUUUAUUGAACUUUAACCCAUUGCCUAUGAAACUGAACUUUCGUUUUGUUUAUGAGGGUUUAGAAA_AA ..(((((((((((((..((......))..))).))))))))))............................((((((((((((.......))))))))))))...... (-18.77 = -18.92 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:41 2006