Locus 5129

Sequence ID 3L_DroMel_CAF1
Location 14,100,662 – 14,100,757
Length 95
Max. P 0.962566
window8121

overview

Window 1

Location 14,100,662 – 14,100,757
Length 95
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 73.14
Mean single sequence MFE -26.47
Consensus MFE -16.32
Energy contribution -16.57
Covariance contribution 0.25
Combinations/Pair 1.23
Mean z-score -1.86
Structure conservation index 0.62
SVM decision value 1.54
SVM RNA-class probability 0.962566
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14100662 95 - 23771897
GCCGACGCCUGCAUUAU-GGCCAACAAGGCAGGCAAGGUCAAGUGGCCAGU-------GGCUAAAGAAAGCAUA------UUGCCUCAUGGCUUAUAAAACAUUUUAAA
((((((((((((....(-(.....))..))))))...)))..(.(((.(((-------((((......))).))------))))).)..)))................. ( -28.10)
>DroSec_CAF1 98985 101 - 1
GCCGACGCCUGCAUUAU-GGCCAACAAGGCAGGCAAGGUCAAGUGGCCAGU-------GGCCAAAGAAAGCAUACAAGUAUUGCCUUAUGGCUUAUAAAGCAUUUUAAA
((((..((((((....(-(.....))..))))))((((.(((.(((((...-------)))))......((......)).))))))).))))................. ( -29.30)
>DroSim_CAF1 100598 93 - 1
GCCGACGCCUGCAUUAU-GGCCAACAAGGCAGGCAAGGUCAAGUGGCCAGU-------GGCCAAAGAAAGCAUA--------GCCUUAUGGCUUAUAAAACAUUUUAAA
(((.((((((((....(-(.....))..))))))..((((....)))).))-------)))............(--------(((....))))................ ( -28.30)
>DroEre_CAF1 97492 95 - 1
GCCGACGCCUGCAUUAU-GGCCAACAACGCAGGCAAGGUCAAGUGGCCAGGGCCCAGUGGCCAAAGAAAGCAU------------ACAAGGCCUAUAAAACAUU-UAAA
(((...((((((....(-(.....))..))))))..(((((...(((....)))...)))))...........------------....)))............-.... ( -30.00)
>DroYak_CAF1 102429 81 - 1
GCCGACGCCUGCCUUAU-GGCCAACAACGCGGGCAAGGUCAAGUGGCCAGU-------GGCU-------GCC-------------UCGAGGCUUAUAAAACAUUUUAAA
(((.((((((((....(-(.....))..))))))..((((....)))).))-------))).-------(((-------------....)))................. ( -25.90)
>DroAna_CAF1 101049 75 - 1
GCCGUCGCCUGCAGUUUGGGCCAAAAACUCAGACAAGGUCAAGUGCUUAAU-------GGAG-------GGC--------------------UUCAAUAUUCCUUUAAA
(((...((((...(((((((.......))))))).))))...).))....(-------((((-------((.--------------------........))))))).. ( -17.20)
>consensus
GCCGACGCCUGCAUUAU_GGCCAACAACGCAGGCAAGGUCAAGUGGCCAGU_______GGCCAAAGAAAGCAU____________UCAUGGCUUAUAAAACAUUUUAAA
(((...((((((................))))))..((((....))))..........)))................................................ (-16.32 = -16.57 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:38 2006