Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,088,372 – 14,088,464 |
Length | 92 |
Max. P | 0.946128 |
Location | 14,088,372 – 14,088,464 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 92.66 |
Mean single sequence MFE | -27.78 |
Consensus MFE | -23.26 |
Energy contribution | -24.34 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.12 |
Mean z-score | -1.80 |
Structure conservation index | 0.84 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946128 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14088372 92 - 23771897 UCGCUCGUCCUCUCGUUUUCAGUAAUAUUUGCUGUCAGUUGCAGUCUUUGUUAAGUUUGUUUAGAGCGGGUGGAAUAUCGAGGGGGCGGUGG- .(((.((((((((((.(((((.(((((...(((((.....)))))...))))).((((.....))))...)))))...))))))))))))).- ( -32.20) >DroSec_CAF1 86714 84 - 1 UCGCUCGUCCUCUCUUUUUCAGUAAUAUUUGCUGUCAGUUGCAGUCUUUGUUAAGUUUGUUUAGAGCGGAUGGAAUAUCGAGGG--------- ....((((((.((((....((((((((...(((((.....)))))...)))))...)))...)))).))))))...........--------- ( -19.00) >DroSim_CAF1 88214 92 - 1 UCGCUCGUCCUCUCUUUUUCAGUAAUAUUUGCUGUCAGUUGCAGUCUUUGUUAAGUUUGUUUAGAGCGGGUGGAAUAUCGAGGGGGCGGUGG- .(((.(((((((((..(((((.(((((...(((((.....)))))...))))).((((.....))))...)))))....)))))))))))).- ( -28.80) >DroEre_CAF1 84877 93 - 1 UCGCUCGUCCUCUCGCUUUCAGUAAUAUUUGCUGUCAGUUGCAGUCUUUGUUAAGUUUGUUUAGAGCGGGCGGAAUAUCGAGGGGGUGGUGGU ((((.(..(((((((..(((..(((((...(((((.....)))))...))))).((((((.....)))))).)))...)))))))..))))). ( -29.60) >DroYak_CAF1 89636 93 - 1 UCGCUCGUCCUCUCGCUUUCAGUAAUAUUUGCUGUCAGUUGCAGUCUUUGUUAAGUUUGUUUAGAGCGGGCGGAGUAUCGAGGGGGUGGUGGU ((((.(..(((((((..(((..(((((...(((((.....)))))...))))).((((((.....)))))).)))...)))))))..))))). ( -29.30) >consensus UCGCUCGUCCUCUCGUUUUCAGUAAUAUUUGCUGUCAGUUGCAGUCUUUGUUAAGUUUGUUUAGAGCGGGUGGAAUAUCGAGGGGGCGGUGG_ .(((.((((((((((..(((..(((((...(((((.....)))))...))))).((((((.....)))))).)))...))))))))))))).. (-23.26 = -24.34 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:33 2006