Locus 5124

Sequence ID 3L_DroMel_CAF1
Location 14,086,699 – 14,086,790
Length 91
Max. P 0.885114
window8114

overview

Window 4

Location 14,086,699 – 14,086,790
Length 91
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 70.93
Mean single sequence MFE -16.86
Consensus MFE -9.83
Energy contribution -10.67
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 0.58
SVM decision value 0.93
SVM RNA-class probability 0.885114
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14086699 91 + 23771897
UUU--UGUUUCCGCCCAUUAAACACU--CGUUUCCCACCUGUCAGAUGCAACUGGCAGGCAGC---GUCGUAACCUUCACGCCCACCCAACGGC-CUCC
...--.......(((...........--.........((((((((......))))))))..((---((.(......).)))).........)))-.... ( -19.60)
>DroSec_CAF1 85046 91 + 1
UUU--UGUUUCCACCCAUUAAACACU--CGUCUCCCACCUGUCAGAUGCAACUGGCAGGCAGC---GUCGUAACCUUCACGCCCACCCAACGGC-CUGC
...--.....................--..........(((((((......)))))))((((.---(((((..................)))))-)))) ( -18.77)
>DroSim_CAF1 86545 91 + 1
UUU--UGUUUCCACCCAUUAAACACU--CGUCUCCCACCUGUCAGAUGCAACUGGCAGGCAGC---GUCGUAACCUUCACGCCCACCCAACGGC-CUGC
...--.....................--..........(((((((......)))))))((((.---(((((..................)))))-)))) ( -18.77)
>DroEre_CAF1 83243 79 + 1
UUU--CGUUUCCACCCAUUAAACAAA--UGUCUCCCACCUGUCAGUUGCCACUGGCAGGCAGC---CUCGCAACCUUCAC------------GC-CCAC
...--.....................--(((......(((((((((....)))))))))....---...)))........------------..-.... ( -13.62)
>DroYak_CAF1 87921 89 + 1
UUUUCUGUUUCCACCCAUUAAACACACUCGACUUCCACCUGUCAGUUGCCACUGGCAGGCAGCGCCCACCCAACGUACAA---------ACAGC-CCAC
....((((((...........................(((((((((....)))))))))..(((.........)))..))---------)))).-.... ( -17.40)
>DroPer_CAF1 97657 73 + 1
--------AUCC---------ACACAC-AGCCACACACCUGUCAAUUGCAA-----AGGCAGC---GGCGUAACCUUCACGCCCACUCGCCCACUCACC
--------....---------....((-((........)))).........-----.(((((.---(((((.......)))))..)).)))........ ( -13.00)
>consensus
UUU__UGUUUCCACCCAUUAAACACA__CGUCUCCCACCUGUCAGAUGCAACUGGCAGGCAGC___GUCGUAACCUUCACGCCCACCCAACGGC_CUAC
.....................................((((((((......))))))))........................................ ( -9.83 = -10.67 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:32 2006