Locus 5123

Sequence ID 3L_DroMel_CAF1
Location 14,072,491 – 14,072,587
Length 96
Max. P 0.629898
window8113

overview

Window 3

Location 14,072,491 – 14,072,587
Length 96
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 87.98
Mean single sequence MFE -26.28
Consensus MFE -18.52
Energy contribution -18.88
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -1.90
Structure conservation index 0.70
SVM decision value 0.20
SVM RNA-class probability 0.629898
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14072491 96 - 23771897
CCCUGUACA--CACACAUUAGAAGGGGUAAAUGGAGUUCCAUUGUGCAUAUU-UUU-GGUAAGCU-AUUCGCAGUGCGAAGAGCUCCAAUCAAAUGACUCA
((((.....--...........))))((((((((....))))).))).((((-(((-((..((((-.(((((...))))).))))))))..)))))..... ( -23.59)
>DroSec_CAF1 70960 97 - 1
CCCUUUAUA--CACACAUUAGAAGGGGUAAAUUGAGUUCCAUUGUGCAUUUU-UUUGGGCAAGCA-AUUCGCAGUGCGAAGAGCUCCAAUCAAAUGACUCA
((((((...--.........))))))......((((((...((((.((....-..)).))))((.-.(((((...)))))..))...........)))))) ( -23.30)
>DroSim_CAF1 72234 98 - 1
CCCUUUAUA--CACACAUUAGAAGGGGUAAAUGGAGUUCCAUUGUGCAUUUUUUUUGGGCAAGCU-AUUCGCAGUGCGAAGAGCUCCAAUCAAAUGACUCA
((((((...--.........)))))).....((((((((..((((.((.......)).))))...-.(((((...)))))))))))))............. ( -26.80)
>DroEre_CAF1 68930 93 - 1
CCCUUUAUA--CACACAUUAGAAGGGAUAAAAGGAGCUCCAUUGUGCAUUUU--UG----GAGCAAAUUCGCAGUGCGUGGAGCUCCAAUCAAAUGACUCA
((((((...--.........))))))......((((((((((...(((((..--((----((.....)))).))))))))))))))).............. ( -30.00)
>DroYak_CAF1 72996 97 - 1
CCCUUUAGAAGCACAAAUUAGAAGGCAUAAAAGGAGCUCCAUUGUGCAUUUU--UU-GGCGAGCA-AUUCGCAGUGCGAGGAGCUCCAAUCGAAUGACUCA
.(((((.((........)).))))).......((((((((.(((..(.....--..-.(((((..-.))))).)..))))))))))).............. ( -27.70)
>consensus
CCCUUUAUA__CACACAUUAGAAGGGGUAAAUGGAGUUCCAUUGUGCAUUUU_UUU_GGCAAGCA_AUUCGCAGUGCGAAGAGCUCCAAUCAAAUGACUCA
((((((..............))))))......((((((((((((((.......................)))))))....))))))).............. (-18.52 = -18.88 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:31 2006