| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,064,323 – 14,064,423 |
| Length | 100 |
| Max. P | 0.759267 |
| Location | 14,064,323 – 14,064,423 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 80.31 |
| Mean single sequence MFE | -31.99 |
| Consensus MFE | -16.98 |
| Energy contribution | -19.54 |
| Covariance contribution | 2.56 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.759267 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14064323 100 + 23771897 ------------UGGGUGAGCAAUGCGAUGGGCGAGUCGAUGCAAUUUUUCUAUUCACAUUUAAAUUGGCAAUUCGUUUGUCCGUGGCUUUUGUGUUCGCCC---AGCGAUUUUU-- ------------((((((((((..((.(((((((((.(((((((((((..............))))).)))..)))))))))))).)).....)))))))))---).........-- ( -36.94) >DroSec_CAF1 62847 100 + 1 ------------UGGGCGAGCAAUGCGAUGGGCGAGUCGAUGCAAUUUUUCUAUUCACAUUUAAAUUGGCAAUUCGUUUGUCCGUGGCUUUUGUGUUCGCCU---AGAGAUUUUU-- ------------((((((((((..((.(((((((((.(((((((((((..............))))).)))..)))))))))))).)).....)))))))))---).........-- ( -36.54) >DroEre_CAF1 60746 100 + 1 ------------UGGGCGAGCAGUGCGAGGGGCGAGUCGAUGCAAUUUUUCUAUUCACAUUUAAAUUGGCAAUUCGUUUGUCCGUGGCUUUUGUGUGCGCCC---AGCGAUUUUU-- ------------((((((.((((.((.(.(((((((.(((((((((((..............))))).)))..)))))))))).).))..))))...)))))---).........-- ( -34.04) >DroYak_CAF1 64380 112 + 1 GCAUGGGUGUGGUGGGUGUGCAAUGCGAUGGGCGAGUCGAUGCAAUUUUUCUAUUCACAUUUAAAUUGGCAAUUCGUUUGUCCGUUGCUUUUGUGUUCGCCC---AGCGAUUUUU-- .........((.((((((.(((..((((((((((((.(((((((((((..............))))).)))..))))))))))))))).....))).)))))---).))......-- ( -37.14) >DroMoj_CAF1 69248 95 + 1 --------------UGUCAGCUCUGA-AGGGGCG----AUUGCAAUUUUUCUAUUCACAUUUAAAUUGGCAAUUCGUUUGGCCGUGGCUUUUGUGUGUUGAC---AGUCACUUUUUA --------------(((((((.(...-..(((((----((((((((((..............))))).)))).))))))(((....))).....).))))))---)........... ( -20.34) >DroAna_CAF1 63179 108 + 1 -------UGGCGCUGUUGUGCCAGGAUGCGGGUGAGUCGAUGCAAUUUUUCUAUUCACAUUUAAAUUGGCAAUUCGUUUGUCCGUGGCUUUUGUGUUCUCGCCAAAACGAUUUUU-- -------((((((....))))))....(((((..((.(((((((((((..............))))).)))..)))))..)))))(((............)))............-- ( -26.94) >consensus ____________UGGGUGAGCAAUGCGAUGGGCGAGUCGAUGCAAUUUUUCUAUUCACAUUUAAAUUGGCAAUUCGUUUGUCCGUGGCUUUUGUGUUCGCCC___AGCGAUUUUU__ .............(((((.(((..((.(((((((((.(((((((((((..............))))).)))..)))))))))))).)).....))).)))))............... (-16.98 = -19.54 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:30 2006