Locus 5121

Sequence ID 3L_DroMel_CAF1
Location 14,063,883 – 14,063,978
Length 95
Max. P 0.688306
window8111

overview

Window 1

Location 14,063,883 – 14,063,978
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 94.84
Mean single sequence MFE -20.67
Consensus MFE -18.64
Energy contribution -19.12
Covariance contribution 0.48
Combinations/Pair 1.06
Mean z-score -1.22
Structure conservation index 0.90
SVM decision value 0.32
SVM RNA-class probability 0.688306
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14063883 95 + 23771897
UAAGCAUGGAAAAAUUCGACUUUGUGCUGAUAAGUUAUAGAAUUUAUGAAUUUGUUUAUGUGCAAGAAAUCAGCAUAAUCGGUGAACGCGUGACU
..((((((.......((((..((((((((((...((((((...)))))).(((((......)))))..))))))))))))))......)))).)) ( -19.72)
>DroSec_CAF1 62423 95 + 1
UUAGCAUGGAAAAAUUUGACUUUGUGCUGAUAAGUCAUAGAAUUUCUGAAUUUGUUUAUGUGCAAGAAAUCAGCAUAAUCGGUGAACGCGUGACU
((((((..((..........))..))))))..((((((.(((((....)))))((((((((((.........)))).....))))))..)))))) ( -18.80)
>DroSim_CAF1 63421 95 + 1
UUAGCAUGGAAAAAUUCGACUUUGUGCUGAUAAGUCAUAGAAUUUAUGAAUUUGUUUAUGUGCAAGAAAUCAGCAUAAUCGGUGAACGCGUGACU
..((((((.......((((..((((((((((...((((((...)))))).(((((......)))))..))))))))))))))......)))).)) ( -21.82)
>DroEre_CAF1 60334 94 + 1
-GAGCAUGGAAAAAUCCGACUUUGUGCUGAUAAGUCAUAGAAUUUAUGAAUUUGUUUAUGUUCAAGAAAUCAGCAUAAUCGCUGAACGCGUGACU
-.((((..((..........))..))))....((((((....(((.(((((........))))).))).(((((......)))))....)))))) ( -21.70)
>DroYak_CAF1 63929 94 + 1
-GAGCAUGGAAAAAUUCGACUUUGUGCUGAUAAGUCAUAGAAUUUAUGAAUUUGUUUAUGUGCAAGAAAUCAGCAUAAUCGUGAAACGCGUGACU
-.((((((......((((...((((((((((...((((((...)))))).(((((......)))))..))))))))))...))))...)))).)) ( -21.30)
>consensus
UGAGCAUGGAAAAAUUCGACUUUGUGCUGAUAAGUCAUAGAAUUUAUGAAUUUGUUUAUGUGCAAGAAAUCAGCAUAAUCGGUGAACGCGUGACU
..((((((.......((((..((((((((((...((((((...)))))).(((((......)))))..))))))))))))))......)))).)) (-18.64 = -19.12 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:29 2006