Locus 5120

Sequence ID 3L_DroMel_CAF1
Location 14,063,002 – 14,063,101
Length 99
Max. P 0.682733
window8110

overview

Window 0

Location 14,063,002 – 14,063,101
Length 99
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 78.34
Mean single sequence MFE -26.40
Consensus MFE -16.57
Energy contribution -16.05
Covariance contribution -0.52
Combinations/Pair 1.33
Mean z-score -1.51
Structure conservation index 0.63
SVM decision value 0.31
SVM RNA-class probability 0.682733
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14063002 99 + 23771897
ACGAAUAUUCUGGACGAUAUCCAGGAUAAACUUUUGGAGCUGCAGAUCCUCCAAGGACAUGCGGUCUGCGA--AAAAGGGGAAAUAAA---UAGUAUAUAAAUC
.....(((((((((.....)))))))))...(((((.(((((((..(((.....)))..))))).)).)))--)).............---............. ( -27.30)
>DroSec_CAF1 61531 99 + 1
UCGAAUAUUCUGGACGAUAUCCAGGAUAAAUUUUUGGCGCUGCAGAUCCUCCAAUGACAUGCGGUCUGCAA--ACAAGGCAAAAUAAA---UAGUAUAUAAAUC
.....(((((((((.....)))))))))...(((((.(..(((((((((...........).)))))))).--....).)))))....---............. ( -24.00)
>DroSim_CAF1 62535 99 + 1
GCGAAUAUUCUGGACGAUAUCCAGGAUAAACUUUUGGCGCUGCAGAUCCUCCAGUGACAUGCGGUCUGCAA--GAACGGCAAAAUAAA---UAGUAUAUAAAUC
.....(((((((((.....)))))))))...(((((.((.((((((((...((......)).)))))))).--...)).)))))....---............. ( -25.80)
>DroEre_CAF1 59469 99 + 1
GCGAAUAUUCUUGACGAUGUCCAGGAUGAACUUUUGGCGCUGCAGAUCCUCCAAGGAGAAGCGGUCUGCGG--AACAGGUAAAAUAAA---UUACAUAUAACUC
.....((((((.(((...))).)))))).....(((...((((((((((((....)))....)))))))))--..)))((((......---))))......... ( -24.10)
>DroYak_CAF1 63087 101 + 1
ACGAAUGUUCUGGACAAUGUCAAGGAUGAACUUUUGGCGCUGCAGAUCCUCCAAGGACAUGCGGUCUGCGGGGGAAAGGGGAAUACAA---UUAUAUAUAAAUC
.....((((((.(.((.((((((((......)))))))).)))...((((((..((((.....))))..))))))....))))))...---............. ( -24.80)
>DroAna_CAF1 62085 102 + 1
UCGGAUGUUCCGGACAAUGUCCAGAAUGAAUUUCUGGCGCUGCAAGUCUUCCUGGGACAUGCGAUCUAGGG--GGAGCGGAUAAUAAGGUGUGGUGUUGGAAUU
......((((.((((...)))).))))....(((..((((..((.(((((((((((.(....).)))))))--))).)...........))..))))..))).. ( -32.40)
>consensus
ACGAAUAUUCUGGACGAUAUCCAGGAUAAACUUUUGGCGCUGCAGAUCCUCCAAGGACAUGCGGUCUGCGA__AAAAGGGAAAAUAAA___UAGUAUAUAAAUC
.(((((((((((((.....)))))))))....))))....(((((((((((....))...).)))))))).................................. (-16.57 = -16.05 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:28 2006