Locus 5119

Sequence ID 3L_DroMel_CAF1
Location 14,061,506 – 14,061,623
Length 117
Max. P 0.780419
window8109

overview

Window 9

Location 14,061,506 – 14,061,623
Length 117
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 86.72
Mean single sequence MFE -44.60
Consensus MFE -38.71
Energy contribution -39.47
Covariance contribution 0.76
Combinations/Pair 1.21
Mean z-score -1.78
Structure conservation index 0.87
SVM decision value 0.56
SVM RNA-class probability 0.780419
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14061506 117 + 23771897
UCGCCGCGGAUUAGCUUCAGAAUGUCCUCAUCUUGGAUGGGGCGCUCACCCAUGACGCGGCGACCCUCGCCAAUGGAGUUAAUCCUGCGGGGAAAAUGCAUCUGUUGUUGCUGGAUG
((.((((((((((((((((....((((.((((...))))))))(((((....))).))((((.....))))..)))))))))))).)))).)).....(((((((....)).))))) ( -48.70)
>DroSec_CAF1 60047 117 + 1
UCGCCGCGGAUUAGCUUCAGAAUGUCCUCAUCUUGGAUGGGGCGCUCUCCCAUGACGCGGCGACCCUCGCCAAUGGAGUUAAUCCUGCGGGGAAAAUUCAUCUGUUGUUGCCAGAUG
((.((((((((((((((((....((((.((((...))))))))((((......)).))((((.....))))..)))))))))))).)))).)).....((((((.......)))))) ( -50.50)
>DroSim_CAF1 61042 117 + 1
UCGCCGCGGAUUAGCUUCAGAAUGUCCUCAUCUUGGAUGGGGCGCUCUCCCAUGACGCGGCGACCCUCGCCAAUGGAAUUAAUCCUGCGGGGAAAAUUCAUCUGUUGUUGCUGGAUG
((((((((((......))(((.(((((.((((...))))))))).))).......)))))))).((((((....(((.....))).))))))......(((((((....)).))))) ( -42.50)
>DroEre_CAF1 57937 117 + 1
UCGCCGCGGAUCAGCUUCAGAAUGUCCUCAUCCUGAAUGGGGCGACCACCGAUGACGCGGCGACCCUCGCCAAUGGAGUUAAUCCUGCGGGGAUAAUAAAUCUGCUGUUGCUGGAUG
((((((((.(((...(((((.(((....))).)))))..((....))...)))..)))))))).((((((....(((.....))).)))))).......((((((....)).)))). ( -44.20)
>DroYak_CAF1 61504 117 + 1
UCGCCACGGAUUAGCUUCAGAAUGUCCUCAUCCUGAAUGGGGCGUUCACCCAUGACGCGGCGACCCUCGCCAAUGGAGUUAAUCCUGCGGGGAAAGUUCCUCUGUUGCUGCUGGAUG
...(((.((((((((((((((((((((.(((.....)))))))))))...........((((.....))))..)))))))))))).((((.((.((.....)).)).)))))))... ( -45.70)
>DroAna_CAF1 60601 113 + 1
UCGCUGCGAAUGAGCUUCAGGAUGUCUUCGUCCUGAAUGAGACGUCCGCCGAGAACACGACGACCCUCGCCAAUGGAGUUGAUCCUGCGGGGAAUAAUCCUUUGCUGCUGUUG----
..((.(((((.((..(((((((((....))))))))).....((((............))))..((((((....(((.....))).)))))).....)).))))).)).....---- ( -36.00)
>consensus
UCGCCGCGGAUUAGCUUCAGAAUGUCCUCAUCCUGAAUGGGGCGCUCACCCAUGACGCGGCGACCCUCGCCAAUGGAGUUAAUCCUGCGGGGAAAAUUCAUCUGUUGUUGCUGGAUG
((.((((((((((((((((((.(((((.(((.....)))))))).))...........((((.....))))..)))))))))))).)))).)).....(((((((....)).))))) (-38.71 = -39.47 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:27 2006