Locus 5116

Sequence ID 3L_DroMel_CAF1
Location 14,057,805 – 14,057,895
Length 90
Max. P 0.978739
window8104

overview

Window 4

Location 14,057,805 – 14,057,895
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 82.80
Mean single sequence MFE -27.52
Consensus MFE -21.86
Energy contribution -21.66
Covariance contribution -0.20
Combinations/Pair 1.09
Mean z-score -2.44
Structure conservation index 0.79
SVM decision value 1.82
SVM RNA-class probability 0.978739
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14057805 90 - 23771897
UCACUUUCACCAAACCAUUCUGAU-UUCGGCUGAGUGCUUUUGAGGCGGAAACGCUCGUAUAAUUUAUGUUCUGCCUUGGCGCUCUGGCAA
........................-....((((((((((...(((((((((.....((((.....)))))))))))))))))))).))).. ( -26.50)
>DroSec_CAF1 56300 90 - 1
UCACUUUCAUUAAACCAUUUUGAU-UUUGGCUGAGUGCUUUUGAGGCGGAAACGCUCGUAUAAUUUAUGUUCUGCCUUGGCGUUUUGGCAA
(((....((((...(((.......-..)))...))))....))).((.((((((((.(((.(((....))).)))...)))))))).)).. ( -19.60)
>DroSim_CAF1 57313 70 - 1
--------------------UGAU-UUUGGCUGAGUGCUUUUGAGGCGGAAACGCUCGUAUAAUUUAUGUUCUGCCUUGGCGCUCUGGCAA
--------------------....-....((((((((((...(((((((((.....((((.....)))))))))))))))))))).))).. ( -26.50)
>DroEre_CAF1 54201 91 - 1
CCACUGGCAGCAAACCAUUCUGGUUUUUGGCUAAGUGCUGUUGAGGCGGAAACGCUCGUAUAAUUUAUGUUCUGCCUUGGCGCUCUGGCAA
.(((((((...(((((.....)))))...))).))))..((..((((((((.....((((.....))))))))))))..))((....)).. ( -31.10)
>DroYak_CAF1 57934 91 - 1
CCGCUUGCACCGAGCCUUUCUGGUUUUUGGCUAAGUGCUUUUGAGCCGGAAAUGCUCGUAUAAUUUAUGUUCUGCCUUGGCGCUCUGGCAA
..(((.((.((((((.((((((((((..(((.....)))...)))))))))).))))(((.(((....))).)))...)).))...))).. ( -33.90)
>consensus
CCACUUGCACCAAACCAUUCUGAU_UUUGGCUGAGUGCUUUUGAGGCGGAAACGCUCGUAUAAUUUAUGUUCUGCCUUGGCGCUCUGGCAA
.............................((((((((((...(((((((((.....((((.....))))))))))))))))))).)))).. (-21.86 = -21.66 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:22 2006