| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,028,809 – 14,028,927 |
| Length | 118 |
| Max. P | 0.550866 |
| Location | 14,028,809 – 14,028,927 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 81.99 |
| Mean single sequence MFE | -18.84 |
| Consensus MFE | -9.83 |
| Energy contribution | -10.63 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550866 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14028809 118 - 23771897 UUUAUUUAUAAAACAUUUCCCUUUUCUUAUACGUAAGUGCCGCAUGUAAAUCUAUUCAAUUGGGCUUCGCUUAGUUGAUUUAUCUUUCUACAUACAUGUUUUAUUGUUCGUUUUAUAU ......((((((((...............(((....)))..(((((((.......((((((((((...))))))))))..............)))))))..........)))))))). ( -21.30) >DroSec_CAF1 27350 118 - 1 UUUAUUUAUAAAACAUUUCCCCUUUCUUAAACGUAAGUGCCACAUGUAAAUCUAUUCAAUUGGGCUUCGCUUAGUUGAUUUAUCUUUCUACAUACAUGAUUUUUGAUUCGUUUUAUAA .....(((((((((................((....))....((((((.......((((((((((...))))))))))..............))))))...........))))))))) ( -20.00) >DroSim_CAF1 27965 118 - 1 UUUAUUUAUAAAACAUUUCCCCUUUCUUAAACGUAAGUGCCACAUGUAAAUCUAUUCAAUUGGGCUUCGCUUAGUUGAUUUAUCUUUCUACAUACAUGUUUUUUUGUUCGUUUUAUAU ......((((((((................((....))...(((((((.......((((((((((...))))))))))..............)))))))..........)))))))). ( -20.20) >DroEre_CAF1 25046 109 - 1 UUUAUCUUAAAAAUAUAUUCCGUUUCUUGAACGUAAUUGCCAAUUGUGGGCCUAUUCAACUAGGCUUCCUUCAGUUGAUUUACUUUUA------CAUGU---AUUGUUCGUUUGACAC .....................(((...((((((.......((((((.(((((((......)))))..))..))))))...(((.....------...))---).))))))...))).. ( -20.50) >DroYak_CAF1 28126 115 - 1 UUUAUUUUAAAAACAUAUUCCCUUUCUUAAACGCAAUUGCCACUUGUGAAUCUAUUCAACUAGGCUUCCUUCAGUUGAUUUAUCUUUAUACACACAUGU---AUUGUUCGUUUUAUAC .........(((((.................(((((.......))))).......(((((((((...)))..)))))).........(((((....)))---)).....))))).... ( -12.20) >consensus UUUAUUUAUAAAACAUUUCCCCUUUCUUAAACGUAAGUGCCACAUGUAAAUCUAUUCAAUUGGGCUUCGCUUAGUUGAUUUAUCUUUCUACAUACAUGUUUUAUUGUUCGUUUUAUAC ............................(((((........(((((((.......(((((((((.....)))))))))..............))))))).........)))))..... ( -9.83 = -10.63 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:16 2006