Locus 511

Sequence ID 3L_DroMel_CAF1
Location 1,513,024 – 1,513,140
Length 116
Max. P 0.541838
window766

overview

Window 6

Location 1,513,024 – 1,513,140
Length 116
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 83.33
Mean single sequence MFE -49.68
Consensus MFE -34.42
Energy contribution -36.23
Covariance contribution 1.81
Combinations/Pair 1.26
Mean z-score -1.75
Structure conservation index 0.69
SVM decision value 0.02
SVM RNA-class probability 0.541838
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1513024 116 - 23771897
UGGAGGAGAAACUGAGGCUCCGCCCACUGGCGCUCAAUCUGCUGGUGCCCGCGUUCAGUCUGUUUCUGUGCGGAAUGUUGGGCAGCGGAAUCGCCUUCCUGGUGGAGAUCCGUCAC
((..(((..........(((((((....((((.....((((((...(((((....((.(((((......))))).)).)))))))))))..)))).....))))))).)))..)). ( -42.50)
>DroVir_CAF1 20152 114 - 1
UCGAGCGGAUGCACGAGGUCCGACCACUGGCCCUCAAUCUGCUGUCGUCCGUUGUGUAUCUAUAUCUGAUCGGGCUGCUCGUUGGCCUUGGCGCGUUUCUUUUGGAGUUUGUUU--
.(((((((((((((((.(..((((....(((.........)))))))..).))))))))))...((..(.((.((((((....)))...))).))......)..)))))))...-- ( -33.50)
>DroSec_CAF1 18062 116 - 1
UGGAGGAGAAACUGCGGCUCCGCCCACUGGCGCUCAAUCUGCUGGUGCCCGCCUUCAGUCUGUUUCUGUGCGGACUGUUGGGCAGCGGGAUCGCCUUCGUGGUGGAGAUCCGCCAC
.(((((.((..(((((((.(((((....)))((.......)).)).))).((((.((((((((......))))))))..)))).))))..)).)))))(((((((....))))))) ( -60.50)
>DroSim_CAF1 18568 116 - 1
UGGAGGAGAAACUGCGGCUCCGCCCACUGGCGCUCAAUCUGCUGGUGCCCGCCUUCAGUCUGUUUCUGUGCGGACUGUUGGGCAGCGGAAUCGCCUUCCUGGUGGAGAUCCGCCAC
.(((((.......(((..(((((.(((..(((.......)))..)))...((((.((((((((......))))))))..)))).)))))..))))))))((((((....)))))). ( -56.01)
>DroEre_CAF1 19614 116 - 1
UGGAGGAGAAACUGCGGCUCCGUCCACUGGCGCUUAAUCUGCUGAUGCCCGCCUUCAGUCUGUUUCUGUGCGGACUGUUGGGCAGCGGAAUCGCCUUCCUGGUGGAGAUACGCCAC
((((((((.........)))).)))).(((((.....((((((...(((((....((((((((......)))))))).))))))))))).(((((.....))))).....))))). ( -48.70)
>DroYak_CAF1 17797 116 - 1
UGGAGGAGAAGCUGCGGCUCCGUCCACUGGCGCUCAAUCUGCUGGUGCCCGCCUUCAGUCUGUUUCUGUGCGGACUGUUGGGCAGCGGCAUCGCCUUCCUGGUGGAGAUCCGCCAC
.(((((.((.((((((((.(((((....)))((.......)).)).))).((((.((((((((......))))))))..)))).))))).)).))))).((((((....)))))). ( -56.90)
>consensus
UGGAGGAGAAACUGCGGCUCCGCCCACUGGCGCUCAAUCUGCUGGUGCCCGCCUUCAGUCUGUUUCUGUGCGGACUGUUGGGCAGCGGAAUCGCCUUCCUGGUGGAGAUCCGCCAC
.............(((((((((((....((((.....(((((...((((((....((((((((......)))))))).)))))))))))..)))).....)))))))..))))... (-34.42 = -36.23 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:53 2006