Locus 5109

Sequence ID 3L_DroMel_CAF1
Location 14,019,924 – 14,020,039
Length 115
Max. P 0.796790
window8094

overview

Window 4

Location 14,019,924 – 14,020,039
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.98
Mean single sequence MFE -23.65
Consensus MFE -12.41
Energy contribution -13.85
Covariance contribution 1.44
Combinations/Pair 1.12
Mean z-score -3.29
Structure conservation index 0.52
SVM decision value 0.60
SVM RNA-class probability 0.796790
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14019924 115 - 23771897
CACCCAAAAUAGCUUACUCGUUCAU----AAACAGAAAUGUAUAUUAAAAUCGUAUGUUAUACAAAAUAUAUGUAUGAAACA-UAUUGUAAGCUAAUAAAUGAAAGGAAUUUUAUUUGCC
.........((((((((...(((((----(.(((....)))..........((((((((......))))))))))))))...-....)))))))).(((((((((....))))))))).. ( -24.60)
>DroSec_CAF1 18686 111 - 1
CACCCAAAAUAGCUUACUCGUACAU----AGAUAGAAAUGUAUUUGAAAUUCGUAUGUUAUACGAAAUAUA----UGAAACA-AAUUGUAAGCUAAUAAAUAAAAGCACUUUUAUUUGCC
.........((((((((..((((((----........))))))......((((((((((......))))))----))))...-....)))))))).(((((((((....))))))))).. ( -24.70)
>DroSim_CAF1 19216 111 - 1
CACCCAAAAUAGCUUACUCGUACAU----AGAUAGAAAUGUAUUUUAAAUUCGUAUGUUAUACGAAAUAUA----UGAAACA-AAUUGUAAGCUAAUAAAUAAAAGCAAUUUUAUUUGCC
.........((((((((..((((((----........))))))......((((((((((......))))))----))))...-....)))))))).(((((((((....))))))))).. ( -26.10)
>DroYak_CAF1 19242 113 - 1
CGCCUAAAAUAGCUUAUUCGUGGAUAUGCAGAUAGAAAUGUAUUUUAAGCUGCA-UUUUAUACAAAAUAUA----UGAAAAACAAUUGUAAGCUAAUAA--AAAAGGAACUUUAAUUGCC
..(((....((((((((...((....(((((.(((((.....)))))..)))))-(((((((.......))----)))))..))...))))))))....--...)))............. ( -19.20)
>consensus
CACCCAAAAUAGCUUACUCGUACAU____AGAUAGAAAUGUAUUUUAAAUUCGUAUGUUAUACAAAAUAUA____UGAAACA_AAUUGUAAGCUAAUAAAUAAAAGCAAUUUUAUUUGCC
.........((((((((..............(((....))).........(((((.....)))))......................)))))))).(((((((((....))))))))).. (-12.41 = -13.85 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:12 2006