Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 14,016,362 – 14,016,481 |
Length | 119 |
Max. P | 0.829471 |
Location | 14,016,362 – 14,016,481 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 86.55 |
Mean single sequence MFE | -30.42 |
Consensus MFE | -23.05 |
Energy contribution | -25.05 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.11 |
Mean z-score | -1.93 |
Structure conservation index | 0.76 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829471 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14016362 119 + 23771897 CAUAUUAUUGACGCAGUGAAUGCGUUCACAGGCUACAUAAGGCGUGAUUGCUAUUUACCUGCUGAACGCACCCAUUGACACUGUUUAAAUACCAAAAGCCCGUCGACAGUAAUACUCCA ..((((.(((((((((((..((((((((((((.((.((..((((....)))))).)))))).))))))))..))))).....((((.........)))).)))))).))))........ ( -31.90) >DroSec_CAF1 15132 119 + 1 CAUAUUAUUGGCGCAGUGGAUGAGUUCACAGGCUACUUAAGGCGUGAUUGCUAUUAAACUGCUGAACGCACCCAUUGACAGUGUUUAAAUACCAAAAGCCCGCCAACAGUAAUACCCCC ..((((.((((((((((((.((.((((((((.....((((((((....)))).)))).))).))))).)).))))))...((((....))))........)))))).))))........ ( -31.50) >DroSim_CAF1 15674 119 + 1 CAUAUUAUUGGCGCAGUGGAUGAGUUCACAGGCUUCUUAAGGCGUGAUUGCUAUUUAACUGCUGAACGCACCCAUUGAGAGUGUUUAAAUACCAAAAGCCCGCCAACAGUGUUACCCCA .(((((.((((((((((((.((.(((((((((((......)))((....)).......))).))))).)).)))))).(.((((....))))).......)))))).)))))....... ( -32.30) >DroYak_CAF1 15550 110 + 1 CAUAUUAUUG--------GACGCGUUCACAGGCAACUUAUUGCGUGAUUGCUAUCUACCUGCUGAACGCACCCAUUGACACUGUUUAAAUACCAAAAGCCCGUCAACAGUAAU-UCUCA ...(((((((--------...((((((((((((((....))))(((((....))).))))).))))))).....(((((...((((.........))))..))))))))))))-..... ( -26.00) >consensus CAUAUUAUUGGCGCAGUGGAUGAGUUCACAGGCUACUUAAGGCGUGAUUGCUAUUUAACUGCUGAACGCACCCAUUGACACUGUUUAAAUACCAAAAGCCCGCCAACAGUAAUACCCCA ..((((.((((((((((((.((((((((((((((......)))((....)).......))).)))))))).)))))).....((((.........)))).)))))).))))........ (-23.05 = -25.05 + 2.00)
Location | 14,016,362 – 14,016,481 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 86.55 |
Mean single sequence MFE | -34.11 |
Consensus MFE | -25.92 |
Energy contribution | -28.55 |
Covariance contribution | 2.63 |
Combinations/Pair | 1.15 |
Mean z-score | -1.49 |
Structure conservation index | 0.76 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586853 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14016362 119 - 23771897 UGGAGUAUUACUGUCGACGGGCUUUUGGUAUUUAAACAGUGUCAAUGGGUGCGUUCAGCAGGUAAAUAGCAAUCACGCCUUAUGUAGCCUGUGAACGCAUUCACUGCGUCAAUAAUAUG ....((((((.((.((.(((....(((..(((.....)))..)))((((((((((((.(((((..(((((......))..)))...)))))))))))))))))))))).)).)))))). ( -38.00) >DroSec_CAF1 15132 119 - 1 GGGGGUAUUACUGUUGGCGGGCUUUUGGUAUUUAAACACUGUCAAUGGGUGCGUUCAGCAGUUUAAUAGCAAUCACGCCUUAAGUAGCCUGUGAACUCAUCCACUGCGCCAAUAAUAUG .((.(((.....((((((((..(((........)))..))))))))(((((.(((((.(((.(((...((......))......))).)))))))).)))))..))).))......... ( -31.30) >DroSim_CAF1 15674 119 - 1 UGGGGUAACACUGUUGGCGGGCUUUUGGUAUUUAAACACUCUCAAUGGGUGCGUUCAGCAGUUAAAUAGCAAUCACGCCUUAAGAAGCCUGUGAACUCAUCCACUGCGCCAAUAAUAUG (((.(((.....(((.(((((((((((((.......(((((.....)))))......((.........))......)))...)))))))))).)))........))).)))........ ( -31.32) >DroYak_CAF1 15550 110 - 1 UGAGA-AUUACUGUUGACGGGCUUUUGGUAUUUAAACAGUGUCAAUGGGUGCGUUCAGCAGGUAGAUAGCAAUCACGCAAUAAGUUGCCUGUGAACGCGUC--------CAAUAAUAUG ...((-..(((((((.....((.....)).....)))))))))..(((..(((((((.(((((((...((......))......))))))))))))))..)--------))........ ( -35.80) >consensus UGGGGUAUUACUGUUGACGGGCUUUUGGUAUUUAAACACUGUCAAUGGGUGCGUUCAGCAGGUAAAUAGCAAUCACGCCUUAAGUAGCCUGUGAACGCAUCCACUGCGCCAAUAAUAUG ...........(((((((((((...((.........))..)))..((((((((((((.(((((((...((......))......)))))))))))))))))))...))))))))..... (-25.92 = -28.55 + 2.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:11 2006