Locus 5107

Sequence ID 3L_DroMel_CAF1
Location 14,015,184 – 14,015,299
Length 115
Max. P 0.897381
window8091

overview

Window 1

Location 14,015,184 – 14,015,299
Length 115
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 75.17
Mean single sequence MFE -20.62
Consensus MFE -3.38
Energy contribution -4.86
Covariance contribution 1.48
Combinations/Pair 1.12
Mean z-score -1.88
Structure conservation index 0.16
SVM decision value 1.00
SVM RNA-class probability 0.897381
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14015184 115 + 23771897
AUGACCGUUCAUAGAUGUAACAAAAAUCUAUACAUUCAACGAACAUAUCGACUGUUUAGUUGAAUGGCUUAUCAGUUAUUACAC-UGAAAACAAAGUUCGAGCUAUAUGUAAUUAA
......((((((((((.........)))))).(((((((((((((.......))))).)))))))).....(((((......))-)))...........))))............. ( -23.60)
>DroSec_CAF1 12296 114 + 1
AUGACCGUUCAUAGAUGUAACGAAAAUCCAUACAUUUAACGAACAUAUCGACUGCUUAGUUGAAUUGGUUAUCAGUUACUACAC-UGAAAACAUAGUUCGAGCUAU-UGUAAUUAA
.(((((((((.((((((((...........))))))))..))))...((((((....))))))...)))))(((((......))-)))..(((((((....)))).-)))...... ( -25.10)
>DroSim_CAF1 12831 115 + 1
AUGACCGUUCAUAGAUGUAACGAAAAUCCACACAUUUAACGAACAUAUCGACUGCUUAGUUGAAUUGGUUAUCAGUUACUACAC-UGAAAACAUAGUUCGAGCUAUAUGUAAUUAA
......((((.(((((((...(.....)...)))))))..((((...((((((....))))))....(((.(((((......))-))).)))...))))))))............. ( -23.40)
>DroEre_CAF1 12039 94 + 1
AUGACCGUUCAUAGAUGUAACGAAAAUCCAUACAUUCUAUAAACAUGUAGAACGUUUAGUUCA-----------AAAAAAACAUUGGCACAA-AUAUCCA----------UAUUAA
.((.(((((.(((((((((...........)))).))))).))).....((((.....)))).-----------...........))))...-.......----------...... ( -13.30)
>DroYak_CAF1 12207 114 + 1
AUGACCGUUCAUAGAUGUUACGAAAAUCCAUACGUUCAACAAAUAUAUCGACUGUUCACUUCAAUUGCUUAUCAAAUAAUACAC-AGAACAA-AAAUUCUUUCUGUGUGUUAUCAA
..(((.(((.(((..(((((((..........)))..))))....))).))).)))...................(((((((((-((((...-.......)))))))))))))... ( -17.70)
>consensus
AUGACCGUUCAUAGAUGUAACGAAAAUCCAUACAUUCAACGAACAUAUCGACUGUUUAGUUGAAUUGCUUAUCAGUUAAUACAC_UGAAAACAAAGUUCGAGCUAU_UGUAAUUAA
......((((...((((((...........))))))....))))...((((((....))))))..................................................... ( -3.38 =  -4.86 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:09 2006