| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,996,538 – 13,996,654 |
| Length | 116 |
| Max. P | 0.894581 |
| Location | 13,996,538 – 13,996,654 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.94 |
| Mean single sequence MFE | -30.53 |
| Consensus MFE | -27.27 |
| Energy contribution | -27.93 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.894581 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13996538 116 - 23771897 GCAAAAGGUGAGCAACUACGCCUUGCACACAAACAACCGCAUCGACGAGCAAACGCA----CGCACACACAAGCCUUAUCGCCUGCGUAGUGGUUGGUGUAUAUAAAAAAUUAAAACAAU (((..(((((........))))))))((((...(((((((...(.((.((....)).----)))..((.((.((......)).)).)).))))))))))).................... ( -27.60) >DroSim_CAF1 7738 116 - 1 GCAAAAGGUGAGCAACUACGCCUUGCACACAAACAACCGCAUCGACGAGCACACACA----CGCACACACAGGCCUUAUCGCCUGCGUAGUGGUUGGUGUAUAUAAAACAUUAAAACAAU (((..(((((........))))))))((((...(((((((........((.......----.))..((.(((((......))))).)).))))))))))).................... ( -32.40) >DroYak_CAF1 9355 120 - 1 GCAAAAGGUGAGCAACUACGCCUUGCACACAAACAACAGCAUCGACGAGCACACACACACGCGCACACACAGGCCUUAUCGCCUGCGUAGUGGUUGGUGUAUAUAAAAAAUUAAAACAAU (((..(((((........))))))))............((((((((..((..........)).(((((.(((((......))))).)).))))))))))).................... ( -31.60) >consensus GCAAAAGGUGAGCAACUACGCCUUGCACACAAACAACCGCAUCGACGAGCACACACA____CGCACACACAGGCCUUAUCGCCUGCGUAGUGGUUGGUGUAUAUAAAAAAUUAAAACAAU (((..(((((........))))))))((((...(((((((........((............))..((.(((((......))))).)).))))))))))).................... (-27.27 = -27.93 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:05 2006