| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,991,744 – 13,991,852 |
| Length | 108 |
| Max. P | 0.887601 |
| Location | 13,991,744 – 13,991,852 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 66.91 |
| Mean single sequence MFE | -38.50 |
| Consensus MFE | -12.64 |
| Energy contribution | -13.35 |
| Covariance contribution | 0.71 |
| Combinations/Pair | 1.52 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.887601 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13991744 108 + 23771897 GUUUUGCGGCGAGGGCGGAGGUGGCGGAGUCAUUUGGGGAGCUGGGGAUUGCAGUUGUCGCGGCGAUUGUG---GCGGCAACAUAUUGCUAGUUGCAUGAUG---CUGCUGUUG .....((((((...((((...(((((.((((.((..(....)..)))))).).((((((((.((....)).---)))))))).....)))).))))....))---))))..... ( -39.40) >DroPse_CAF1 6159 108 + 1 ACUCUGUGGCGAAGGAGGUGGCGGAGGAGUCAUUUGCGGUGCUGGCGAUUGAAGCUGGCGCGGAGACUGAG---GUGGCAGCAUGUUGCUGGUGGCAUGAUG---UUGCUGCUG .((((((.((.......)).)))))).((((.....(.((((..((.......))..)))).).))))..(---(..(((((((..(((.....)))..)))---))))..)). ( -46.40) >DroGri_CAF1 17624 108 + 1 ACUCUGUGGCGAGGGCGGCGGUGGUGGCGUCAUUUGUGGUGCUGGCGAUUGCAAUUGUCGCGGUGACUGUG---GCGGCAACAUAUUGCUGGCAGCCACAUG---CUGUUGCUG .(((......)))(((((((((((((((.(((....)))(((..((((((((....((((((....).)))---)).)))....)))))..)))))))).))---)))))))). ( -46.40) >DroSec_CAF1 5351 108 + 1 GUUUUGCGGCGAGGGAGGAGGUGGCGGAGUCAUUUGGGGAGCCGGGGAUUGCAGUUGUCGCGGCGAUUGUG---GCGGCAACAUAUUGCUAGUUGCAUGAUG---AUGCUGUUG .....((((((.....(.((.(((((.((((.(((((....))))))))).).((((((((.((....)).---)))))))).....)))).)).)......---.)))))).. ( -36.40) >DroEre_CAF1 3960 84 + 1 ------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNCAGUUGGCGAGGCGAUUGUG---GCGGCAACAUAUUGCUAGUUGUAUGGUG---CUGUUGUUG ------------------------...........................((((((......)))))).(---((((((.(((((........))))).))---))))).... ( -15.80) >DroWil_CAF1 43729 114 + 1 ACUCUGUGGUGAAGGCGGUGGCGGCGGUGUCAUUAGUGGAGCGGGUGAUUGUAGCUGCCGCGGCGAUUGUGGUGGCGGUAACAUAUUGCUGCUGGCAUGAUGUUGCUGCUGUUG .....(..(..(..((.((((((((...(((((..(.....)..)))))....)))))))).)).((..((.(((((((((....))))))))).))..)).)..)..)..... ( -46.60) >consensus ACUCUGUGGCGAGGGCGGAGGUGGCGGAGUCAUUUGGGGAGCUGGCGAUUGCAGUUGUCGCGGCGAUUGUG___GCGGCAACAUAUUGCUAGUUGCAUGAUG___CUGCUGUUG ...((((((((..........((.(((..((......))..))).))........))))))))...........((((((.(((..(((.....)))..)))....)))))).. (-12.64 = -13.35 + 0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:02 2006