Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,507,593 – 1,507,698 |
Length | 105 |
Max. P | 0.522230 |
Location | 1,507,593 – 1,507,698 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 80.07 |
Mean single sequence MFE | -28.93 |
Consensus MFE | -18.09 |
Energy contribution | -17.90 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.24 |
Mean z-score | -1.44 |
Structure conservation index | 0.63 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522230 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1507593 105 + 23771897 AGGGCAAGAAGCCAAACUUGCCCAAAAUGGCUUCCUGGAAGAACAGCAUUCUGUCUGAUCUGCUCUCCUCGGGAAACUCUGCA--AUCAUAGUUCAAGUUUA--AACAC .(((((((........))))))).....((.(((((((.(((.(((...((.....)).))).))).).)))))).)).....--.................--..... ( -25.50) >DroPse_CAF1 16084 107 + 1 AGGGCAGAAAUCCAAACUUGGCCAAGAUGGCUUCUUGAAGGAACAGCAUGCGAUCGGAUCUGCUUUCCUCGGGGAAUUCUGCGGAAAAACAUUUCAUGACGA--UAUCA ...((((((.(((......((((.....))))..((((.((((.((((..(.....)...))))))))))))))).)))))).((((....)))).......--..... ( -27.50) >DroSec_CAF1 12625 105 + 1 AGGGCAAGAAGCCAAACUUGCCCAGUAUGGCUUCCUGGAAGAACAGCAUUCUGUCGGAUCUGCUCUCCUCGGGAAACUCUGCA--AUCAUAGAUCAAGUUUA--AACAC .(((((((........))))))).(((.((.(((((((.(((.(((.((((....))))))).))).).)))))).)).))).--.................--..... ( -31.60) >DroEre_CAF1 14192 107 + 1 AGGGCAGGAAUCCAAACUUGCCCAAAAUGGCUUCCUGGAAGAACAGCAUUCUGUCUGAUCUGCUUUCCUCGGGGAAUUCUGCA--AUCAUAAUUCACAGUCAAUAACGA .(((((((........)))))))....(((((.(((((..(((.((((.((.....))..))))))).)))))(((((.((..--..)).)))))..)))))....... ( -28.80) >DroYak_CAF1 12435 105 + 1 AGGGCAGGAAUCCAAACUUGCCCAAAAUGGCUUCCUGGAGGAACAGCAUUCUGUCUGCUCUGCUUUCCUCGGGGAAUUCUGCA--AUCAUAAAUC--AGUCAAUAAAGA .(((((((........)))))))....(((((((((.((((((.((((............)))))))))).))))........--..........--)))))....... ( -32.66) >DroPer_CAF1 15136 107 + 1 AGGGCAGAAAUCCAAACUUGGCCAAGAUGGCUUCUUGAAGGAACAGCAUGCGAUCGGAUCUGCUUUCCUCGGGGAAUUCUGCGGAAAAACAUUUCAUGACGA--UCUCA ...((((((.(((......((((.....))))..((((.((((.((((..(.....)...))))))))))))))).)))))).((((....)))).......--..... ( -27.50) >consensus AGGGCAGGAAUCCAAACUUGCCCAAAAUGGCUUCCUGGAAGAACAGCAUUCUGUCGGAUCUGCUUUCCUCGGGGAAUUCUGCA__AUCAUAAUUCAAGAUCA__AACAA .(((((((........)))))))......(((((((((.(((.(((.(((......)))))).)))..))))))).....))........................... (-18.09 = -17.90 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:52 2006