Locus 5099

Sequence ID 3L_DroMel_CAF1
Location 13,984,443 – 13,984,562
Length 119
Max. P 0.973177
window8079

overview

Window 9

Location 13,984,443 – 13,984,562
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.01
Mean single sequence MFE -30.85
Consensus MFE -23.60
Energy contribution -24.52
Covariance contribution 0.92
Combinations/Pair 1.21
Mean z-score -2.55
Structure conservation index 0.76
SVM decision value 1.71
SVM RNA-class probability 0.973177
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13984443 119 + 23771897
AUGCUCACCGAGGAAUGUGCCACAAAAUUUUGUUUUCUGCGUAAUUUAAUCCGGUGAAAUUAGCAAGAUUAAAUUUUCGUAACCGUUUUC-GAUAUGUUCCUUGUUGCAGCAUUUUUCAA
(((((((.(((((((((((.(((((....))))....((((.(((((((((..((.......))..)))))))))..)))).........-).))))))))))).)).)))))....... ( -29.90)
>DroSec_CAF1 21688 119 + 1
AUGCUCACCGACGAAUGUGCCACAAAAUUUUGUUUGUUGCGUAAUUUAAUCCGGUGAAAUUUGCCAGAUUAAAAUUUCGUAACCGUUUUC-GAUAUGUUCCUUGUUGCAGCAUUUUUCAA
(((((((.(((.(((((((.(((((....))))..((((((...(((((((.((..(...)..)).)))))))....)))))).......-).))))))).))).)).)))))....... ( -27.60)
>DroSim_CAF1 20163 119 + 1
AUGCUCACCGACGAAUGUGCCAGAAAAUUUUGUUUGUUGCGUAAUUUAAUUCGGUGAAAUAUGCCAGAUUAAAUUUUCGUAACCGUUUUC-GAUAUGUUCCUUGUUGCAGCAUUUUUCAA
(((((((.(((.(((((((...((((((.......((((((.((((((((..(((.......)))..))))))))..)))))).))))))-..))))))).))).)).)))))....... ( -30.00)
>DroEre_CAF1 22167 120 + 1
AUGCUCACCGAGGGAUGUGCCCGAAAACGUUGUAUGCUGCGUAAUUUAAUCAGGUUAAUUUUACAAAAUUACAUUUUCAUAGGCGUUUUUCGAUAUGUUCCUUGUUGCAGCAUUUUUCAA
(((((((.(((((((((((.(.(((((((((.((((....(((((((..................))))))).....))))))))))))).).))))))))))).)).)))))....... ( -30.77)
>DroYak_CAF1 22118 119 + 1
AUGCUCACCAAGGGAUGUGCAAGAAAACGUUUUUUGCUGUGAAAUUUAAUCAGGUUUAGUUUACACGAUUAAAUUUUUGUAGCCGUUUUU-GAAAUGUUCCUUGUUGCAGCAUUUUUCGA
(((((((.((((((((((....(((((((......((((..((((((((((..((.......))..))))))).)))..)))))))))))-...)))))))))).)).)))))....... ( -36.00)
>consensus
AUGCUCACCGAGGAAUGUGCCAGAAAAUUUUGUUUGCUGCGUAAUUUAAUCCGGUGAAAUUUGCAAGAUUAAAUUUUCGUAACCGUUUUC_GAUAUGUUCCUUGUUGCAGCAUUUUUCAA
(((((((.(((((((((((.(.((((((.......((((((.(((((((((..((.......))..)))))))))..)))))).)))))).).))))))))))).)).)))))....... (-23.60 = -24.52 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:58 2006