Locus 5096

Sequence ID 3L_DroMel_CAF1
Location 13,976,580 – 13,976,696
Length 116
Max. P 0.713822
window8072

overview

Window 2

Location 13,976,580 – 13,976,696
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 93.28
Mean single sequence MFE -32.36
Consensus MFE -26.16
Energy contribution -25.80
Covariance contribution -0.36
Combinations/Pair 1.28
Mean z-score -1.55
Structure conservation index 0.81
SVM decision value 0.38
SVM RNA-class probability 0.713822
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13976580 116 - 23771897
CUUCUUGCUGGUCUUACCGCUACUGCCAGUAGGAGUACCGCUUCCGCUGGCGUUCUUCUCUCCGCCCAUACCAACAGCGCUCUUUUUAGUUUUCUUUAAGGUAGAGGUACUUCCCG
..((((((((((..((....))..))))))))))(((((.....((((((((..........)))).........))))((((((..((....))..)))).)).)))))...... ( -29.90)
>DroSec_CAF1 13788 116 - 1
CUUCUUGCUGGACUUACCGCUAGUGCCAGUAGGAGUACCGCUUCCGCUGGCGUUCUUCUCUCCGCCCAUACCAACACCGCUCUUUUUAGCUUUCUUUAAGGUAGAGUUACUUCCCG
..((((((((((((.......))).)))))))))(((.(.((.((...((((..........))))............(((......))).........)).)).).)))...... ( -25.90)
>DroSim_CAF1 13007 116 - 1
CUUCUUGCUGGACUUACCGCUAGUGCCAGUAGGAGUACCGCUUCCGCUGGCGUUCUUCUCUCCGCCCAUACCAACACCGCUCUUUUUAGCUUUCUUUAAGGUAGAGGUACUUCCCG
..((((((((((((.......))).)))))))))(((((.((.((...((((..........))))............(((......))).........)).)).)))))...... ( -32.50)
>DroEre_CAF1 14345 116 - 1
CUUCUUGCUGGACUUGCUGCUGCUGCCAGUGGGAGUACCGCUUCCGCUGGUAUUCUUCUCUGCGCCCAUGCCAACACCGCUCUUUUUAGCUUUCUUUAAUGUGGAGGUACUUCCCG
......(((((....((....))..)))))(((((((((...(((((((((((..............)))))).....(((......)))..........)))))))))))))).. ( -34.74)
>DroYak_CAF1 14288 116 - 1
CUUCUUGCUGGACUUGCCGCUGCUGCCAGUGGGAGUACCGCUUCCGCUGGCGUUCUUUUCUCCGCCCAUACCAACACCGCUCUUUUUGGCUUUCUUUAAGGUGGAGGUACUUCCCG
.........(((..((((......(((((((((((.....))))))))))).........((((((..........(((.......)))..........))))))))))..))).. ( -38.75)
>consensus
CUUCUUGCUGGACUUACCGCUACUGCCAGUAGGAGUACCGCUUCCGCUGGCGUUCUUCUCUCCGCCCAUACCAACACCGCUCUUUUUAGCUUUCUUUAAGGUAGAGGUACUUCCCG
.........(((..((((.(((((((((((.((((.....)))).))))))...........................(((......))).........))))).))))..))).. (-26.16 = -25.80 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:51 2006