Locus 5095

Sequence ID 3L_DroMel_CAF1
Location 13,973,461 – 13,973,578
Length 117
Max. P 0.829624
window8071

overview

Window 1

Location 13,973,461 – 13,973,578
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.60
Mean single sequence MFE -36.37
Consensus MFE -21.92
Energy contribution -19.65
Covariance contribution -2.27
Combinations/Pair 1.61
Mean z-score -2.03
Structure conservation index 0.60
SVM decision value 0.71
SVM RNA-class probability 0.829624
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13973461 117 + 23771897
GACCACGGACGGUAGCACCAGCAACGUCAUCAUUGACGCAUCAGCUGCGGCACCACCGCACAACUCCAAACUGUUGCUUAGUAAUCUCACUGUGCUCUCCAAACAGGCACCAG---UCCA
......(((((((.((...((((((((((....))))((....))(((((.....)))))............))))))...........((((.........))))))))).)---))). ( -35.10)
>DroVir_CAF1 9717 116 + 1
CACUACCGAUGGCAGCACUAGCAAUGUCAUCAUCGAUACCUCCGCCGCGGCGCCGCCACAUAACUCCAAGCUAUUGCUUAGUAAUCUCACGGUGCUGUCCAAGCAGGCGCCA----UCCA
.......((((((.((.((.((..((((......))))........(((((((((.......(((..((((....))))))).......)))))))))....))))))))))----)).. ( -35.84)
>DroPse_CAF1 11450 112 + 1
GACCACUGAUGGCAGCACCAGCAAUGUCAUUAUCGAUGCCGGAGCUGCUGCCCCGCCACACAACUCCAAGCUGCUCCUCAGCAAUCUCACGGUCCUGUCGAAGCAAG-----G---UCCU
((((..((((((((((....))..))))))))((((((((((((.((.((........)))).))))..((((.....))))........)))...))))).....)-----)---)).. ( -33.20)
>DroEre_CAF1 11217 117 + 1
GACCACGGACGGUAGCACCAGCAACGUCAUCAUCGACGCAUCAGCUGCGGCGCCGCCGCACAACUCAAAACUGUUGCUUAGUAAUCUCACUGUGCUCUCCAAGCAGGCACCAG---UCCA
......(((((((.((...(((((((((......)))((....))((((((...))))))............))))))...........((((.........))))))))).)---))). ( -35.50)
>DroAna_CAF1 11533 120 + 1
CACCACCGACGGCAGCACCAGCAACGUCAUCAUUGAUGCCUCGGCGGCGACACCGCCGCACAACUCUAAGCUGCUGCUCAGCAAUCUCACGGUGCUAUCGAAGCAGGCGCCCGGUGUUCC
...(((((.((..(((((((((..(((((....))))).....((((((....))))))..........)))(((....)))........))))))..))..((....)).))))).... ( -45.40)
>DroPer_CAF1 18044 112 + 1
GACCACUGAUGGCAGCACCAGCAAUGUCAUUAUCGAUGCCGGAGCUGCUGCCCCGCCACACAACUCCAAGCUGCUCCUCAGCAAUCUCACGGUCCUGUCGAAGCAAG-----G---UCCU
((((..((((((((((....))..))))))))((((((((((((.((.((........)))).))))..((((.....))))........)))...))))).....)-----)---)).. ( -33.20)
>consensus
GACCACCGACGGCAGCACCAGCAACGUCAUCAUCGAUGCCUCAGCUGCGGCACCGCCACACAACUCCAAGCUGCUGCUCAGCAAUCUCACGGUGCUGUCCAAGCAGGC_CCAG___UCCA
...(((((.((((.((..((((..((((......)))).....))))..))...))))...........((((.....)))).......))))).......................... (-21.92 = -19.65 +  -2.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:50 2006