| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,972,795 – 13,972,885 |
| Length | 90 |
| Max. P | 0.996033 |
| Location | 13,972,795 – 13,972,885 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 90.33 |
| Mean single sequence MFE | -32.10 |
| Consensus MFE | -29.82 |
| Energy contribution | -30.06 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.93 |
| SVM decision value | 2.64 |
| SVM RNA-class probability | 0.996033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13972795 90 + 23771897 GCCUACAGUUGUCACCACUGGGAGUUUCAGCUUCCGUCAUCCGUGCCAGAGCCAGAGGUUAUGCAUUGAGCCCCCAAUGUUUUGGGGGCA ...................((((((....))))))....((.((((...((((...))))..)))).))((((((((....)))))))). ( -32.00) >DroSec_CAF1 10017 87 + 1 ---UACAGUUAUUACCACUGGGAGUUUCAGCUUCCGUCAUCCGUGCCAGAGCCAGAGGUUAUGCAUUGAGCCCCCAAUGUUUUGGGGGCA ---................((((((....))))))....((.((((...((((...))))..)))).))((((((((....)))))))). ( -32.00) >DroEre_CAF1 10551 90 + 1 GUCUACAGUCGUUACCACUGGGAGUUUCAGCUUCCGUCAUCCGUGCCAGAGCCAGAGGUUAUGCAUUGAGCCCCCAAUGUUUUGGGGGCA .....(((((((.(((...((((((....))))))....((.(.((....))).))))).))).)))).((((((((....)))))))). ( -33.40) >DroYak_CAF1 10470 90 + 1 GCCUACAGUUGUUACCACUGGGAGUUUCAGCUUCCGUCAUCCGUGCCAGAGCCAGAGGUUAUGCAUUGAGCCCCCAAUGUUUUGGGGGCA ...................((((((....))))))....((.((((...((((...))))..)))).))((((((((....)))))))). ( -32.00) >DroAna_CAF1 10858 81 + 1 UCCU---------ACCACAGAGAGUCUCAGCGUCCGUCCUCCGUGCCAGAGCCAGAGGUUAUGCAUUGGGCCCCCAAUGUUUUGGGGGCA ....---------.(((..(((...))).((((....((((.(.((....))).))))..))))..)))((((((((....)))))))). ( -31.10) >consensus GCCUACAGUUGUUACCACUGGGAGUUUCAGCUUCCGUCAUCCGUGCCAGAGCCAGAGGUUAUGCAUUGAGCCCCCAAUGUUUUGGGGGCA ...................((((((....))))))....((.((((...((((...))))..)))).))((((((((....)))))))). (-29.82 = -30.06 + 0.24)
| Location | 13,972,795 – 13,972,885 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 90.33 |
| Mean single sequence MFE | -29.12 |
| Consensus MFE | -26.16 |
| Energy contribution | -26.04 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.842468 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13972795 90 - 23771897 UGCCCCCAAAACAUUGGGGGCUCAAUGCAUAACCUCUGGCUCUGGCACGGAUGACGGAAGCUGAAACUCCCAGUGGUGACAACUGUAGGC .((((((((....))))))))(((........(.((((((....)).)))).).(....).)))..((..(((((....).))))..)). ( -29.30) >DroSec_CAF1 10017 87 - 1 UGCCCCCAAAACAUUGGGGGCUCAAUGCAUAACCUCUGGCUCUGGCACGGAUGACGGAAGCUGAAACUCCCAGUGGUAAUAACUGUA--- .((((((((....))))))))..........(((.((((.((.(((.((.....))...))))).....)))).)))..........--- ( -27.70) >DroEre_CAF1 10551 90 - 1 UGCCCCCAAAACAUUGGGGGCUCAAUGCAUAACCUCUGGCUCUGGCACGGAUGACGGAAGCUGAAACUCCCAGUGGUAACGACUGUAGAC .((((((((....))))))))..........(((.((((.((.(((.((.....))...))))).....)))).)))............. ( -27.70) >DroYak_CAF1 10470 90 - 1 UGCCCCCAAAACAUUGGGGGCUCAAUGCAUAACCUCUGGCUCUGGCACGGAUGACGGAAGCUGAAACUCCCAGUGGUAACAACUGUAGGC .((((((((....))))))))..........(((.((((.((.(((.((.....))...))))).....)))).)))............. ( -27.70) >DroAna_CAF1 10858 81 - 1 UGCCCCCAAAACAUUGGGGGCCCAAUGCAUAACCUCUGGCUCUGGCACGGAGGACGGACGCUGAGACUCUCUGUGGU---------AGGA .((((((((....))))))))((..(((....((((((((....)).)))))).....(((.(((...))).)))))---------))). ( -33.20) >consensus UGCCCCCAAAACAUUGGGGGCUCAAUGCAUAACCUCUGGCUCUGGCACGGAUGACGGAAGCUGAAACUCCCAGUGGUAACAACUGUAGGC .((((((((....))))))))..........(((.((((.(..(((.((.....))...)))..)....)))).)))............. (-26.16 = -26.04 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:49 2006