Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,971,318 – 13,971,415 |
Length | 97 |
Max. P | 0.696448 |
Location | 13,971,318 – 13,971,415 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 72.49 |
Mean single sequence MFE | -24.94 |
Consensus MFE | -16.78 |
Energy contribution | -17.02 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.06 |
Mean z-score | -1.30 |
Structure conservation index | 0.67 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.696448 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13971318 97 + 23771897 CAGAAA----------AACAAGAA----GAA-GAA---AACUACUAGCGAUGAAUGCCGCGCCGGAUGCCAAGGCGAAAUUAGUGCAUUCACUUUUCGCUCCGCUUUGCUUUUUU ......----------.....(((----(((-(..---.......(((((((((((((.((((.........))))......).)))))))....)))))........))))))) ( -23.33) >DroVir_CAF1 7529 98 + 1 UAACAAUGCAGCGGCGAGUAAGAC----GAC-GAUGUCGUCGACU-GCCGUGAAUGCCGCGCCGGGUGCCAAGGCAAAAUUAGUGCAUUCACUUUUUGCUUUG----G------- ...(((.((((.(((.(((..(((----(((-...)))))).)))-)))((((((((.((......(((....)))......))))))))))...)))).)))----.------- ( -37.50) >DroSec_CAF1 8582 102 + 1 CAGCAA----------AACAAGAAAGAAAAAAAAA---AACUACUAGCGAUGAAUGCCGCGCCGGAUGCCAAGGCGAAAUUAGUGCAUUCACUUUUCGCUCUGCUUUGCUUUUUU .(((((----------(...(((.((.........---..))....((((((((((((.((((.........))))......).)))))))....)))))))..))))))..... ( -23.00) >DroSim_CAF1 8167 101 + 1 CAGAAA----------AACAAGAAAGAAAAA-AAA---AACUACUAGCGAUGAAUGCCGCGCCGGAUGCCAAGGCGAAAUUAGUGCAUUCACUUUUCGCUCUGCUUUGCUUUUUU .(((((----------(.((((..(((....-...---........((((((((((((.((((.........))))......).)))))))....)))))))..)))).)))))) ( -21.46) >DroEre_CAF1 9035 74 + 1 AAGAA----------------------------------ACAACUAGCGAUGAAUGCCGCGCCGGAUGCCAAGGCGAAAUUAGUGCAUUCACUUUUCGCUCUGCUUUG------- .....----------------------------------......(((((((((((((.((((.........))))......).)))))))....)))))........------- ( -19.40) >consensus CAGAAA__________AACAAGAA____AAA_AAA___AACUACUAGCGAUGAAUGCCGCGCCGGAUGCCAAGGCGAAAUUAGUGCAUUCACUUUUCGCUCUGCUUUGCUUUUUU ..............................................((((((((((((.((((.........))))......).)))))))....))))................ (-16.78 = -17.02 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:47 2006