Locus 5092

Sequence ID 3L_DroMel_CAF1
Location 13,967,992 – 13,968,086
Length 94
Max. P 0.513393
window8067

overview

Window 7

Location 13,967,992 – 13,968,086
Length 94
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 77.73
Mean single sequence MFE -20.95
Consensus MFE -6.89
Energy contribution -6.92
Covariance contribution 0.03
Combinations/Pair 1.24
Mean z-score -2.51
Structure conservation index 0.33
SVM decision value -0.04
SVM RNA-class probability 0.513393
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13967992 94 - 23771897
ACCCACACAAACGUAUAUCUGUGCAUGCCUUUCUACGUAGGUAUGUGUAAAAUCUAUA--------CACACGGAUGUUGGCGCACAUAUACACAAAAAGUAA
............((((((.(((((((((((........))))))(((((.......))--------)))..........))))).))))))........... ( -23.40)
>DroPse_CAF1 6238 87 - 1
ACUCACAAACACA--------CGCAUGUAUUUC------GGUAUGUGUAAAAUCUAUACACACAUACAUACGGAUGUUGGCGCACAUAUACA-AAAAUGAGA
.((((..((((..--------((.((((((...------.((.((((((.....)))))).)))))))).))..))))(.....).......-....)))). ( -16.60)
>DroEre_CAF1 5739 94 - 1
ACCCACACAAACGUAUAUUUGUGCAUGCCUUUCUACGUAGGUAUGUGUAAAAUUUAUA--------CACACGGAUGUUGGCGCACAUAUACACAAAAAGUAA
............((((((.(((((((((((........))))))(((((.......))--------)))..........))))).))))))........... ( -23.40)
>DroYak_CAF1 5602 94 - 1
ACCCACACAAACGUAUAUCUGUGCAUGCCUUUCUACGUAGGUAUUUGUAAAAUCUAUA--------CACACGGAUGUUGGCGCACAUAUACACAAAAAGUAA
............((((((.(((((((((((........))))))...(((.((((...--------.....)))).)))))))).))))))........... ( -19.90)
>DroAna_CAF1 6567 99 - 1
ACCCACACAUACGUAUUUCUGUGCAUGCCU--CUAUGUAGGUAUGUGUAA-AUCUAUACUCUCCUACAUACGGAUGUUGGCGCACAUAUACACAAAAAAGAA
............((((...(((((..((((--(((((((((...(((((.-...)))))...)))))))..)))....)))))))).))))........... ( -25.80)
>DroPer_CAF1 12833 87 - 1
ACUCACAAACACA--------CGCAUGUAUUUC------GGUAUGUGUAAAAUCUAUACACACAUACAUACGGAUGUUGGCGCACAUAUACA-AAAAUGAGA
.((((..((((..--------((.((((((...------.((.((((((.....)))))).)))))))).))..))))(.....).......-....)))). ( -16.60)
>consensus
ACCCACACAAACGUAUAUCUGUGCAUGCCUUUCUACGUAGGUAUGUGUAAAAUCUAUA________CACACGGAUGUUGGCGCACAUAUACACAAAAAGUAA
.((.((...............(((((((((........)))))))))....((((................)))))).))...................... ( -6.89 =  -6.92 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:46 2006