Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,967,291 – 13,967,410 |
Length | 119 |
Max. P | 0.972751 |
Location | 13,967,291 – 13,967,410 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 90.59 |
Mean single sequence MFE | -37.42 |
Consensus MFE | -30.76 |
Energy contribution | -31.12 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.11 |
Mean z-score | -2.08 |
Structure conservation index | 0.82 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.972751 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13967291 119 + 23771897 CUAAACGAAAAACGGUCUUACUAUAUAAAUAAAUAUAUAUCGGCAAGGCUAAUAGUAUAGGAUCCCUGGUCGAGCGAUAACGAUCUAUCGCUCCGCUGUAGUGUGACCGUCUUCGGUUG .....((((..((((((.(((((((................(((.((((((......)))....))).)))((((((((......))))))))...))))))).)))))).)))).... ( -36.00) >DroSec_CAF1 4665 119 + 1 UUAAACGAAAAACGGUCUUGCUAUUUCAAUCGAUAUACAUCGGCAAGGCUCAUCGUAUGGGAUCCCUGGUCGAGCGAUAACGAUCUAUCGCUCCGCUGUAGUGUGACCGUCUUCGGUUG .....((((..((((((.((((((..(..............(((.((((((((...)))))...))).)))((((((((......)))))))).)..)))))).)))))).)))).... ( -37.40) >DroSim_CAF1 4162 119 + 1 UUAAACGAAAAACGGUCCUGCUAUUUCAAUCGAUAUACAUCGGCAAGGCUCAUCGAAUAGGAUCCCUGGUCGAGCGAUAACGAUGUAUCGCUCCGCUGUAGUGUGACCGUCUUCGGUUG .....((((..((((((.((((((.....(((((....)))))...(((.....((.((((...)))).))((((((((......)))))))).))))))))).)))))).)))).... ( -37.10) >DroEre_CAF1 5037 119 + 1 AUAAACGAUGAACGGUAUCGCUAUUGCAAUCGAUAUACAUCGGCAAAGCUCAUCGUAUAGAAUCCCUGGUCGAGCGAUAAUGAUCUAUCGCCCCGCUGUAGUGUGACCGUCUUCGGUUG .....(((.((.((((..((((((.((....(((....)))(((...((((((((...........)))).))))((((......)))))))..)).))))))..)))))).))).... ( -34.10) >DroYak_CAF1 4900 119 + 1 AUAACCGAUGAACGGUCUUGCUAUUGCAAUCGAUAUACAUCGGCAAAGCUCAUCGUAUAGAAUCCCUGGUCGAGCGAUAACGAUCUAUCGCCCCGAUGUAGUGUGACCGUCUUCGGUUG .(((((((.((.(((((((((....))))......((((((((.........(((..(((.....)))..)))((((((......)))))).))))))))....))))))).))))))) ( -42.50) >consensus AUAAACGAAAAACGGUCUUGCUAUUUCAAUCGAUAUACAUCGGCAAGGCUCAUCGUAUAGGAUCCCUGGUCGAGCGAUAACGAUCUAUCGCUCCGCUGUAGUGUGACCGUCUUCGGUUG .....(((...((((((.((((((.........(((((((.(((...))).)).)))))........(((.((((((((......)))))))).))))))))).))))))..))).... (-30.76 = -31.12 + 0.36)
Location | 13,967,291 – 13,967,410 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 90.59 |
Mean single sequence MFE | -37.68 |
Consensus MFE | -29.16 |
Energy contribution | -29.32 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.15 |
Mean z-score | -2.36 |
Structure conservation index | 0.77 |
SVM decision value | 1.45 |
SVM RNA-class probability | 0.954772 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13967291 119 - 23771897 CAACCGAAGACGGUCACACUACAGCGGAGCGAUAGAUCGUUAUCGCUCGACCAGGGAUCCUAUACUAUUAGCCUUGCCGAUAUAUAUUUAUUUAUAUAGUAAGACCGUUUUUCGUUUAG .(((.((((((((((.........(((((((((((....)))))))))...(((((...(((......)))))))).)).((((((......))))))....)))))))))).)))... ( -35.70) >DroSec_CAF1 4665 119 - 1 CAACCGAAGACGGUCACACUACAGCGGAGCGAUAGAUCGUUAUCGCUCGACCAGGGAUCCCAUACGAUGAGCCUUGCCGAUGUAUAUCGAUUGAAAUAGCAAGACCGUUUUUCGUUUAA .(((.((((((((((....((((.(((((((((((....)))))))))...(((((.((.........)).))))).)).))))......(((......))))))))))))).)))... ( -36.00) >DroSim_CAF1 4162 119 - 1 CAACCGAAGACGGUCACACUACAGCGGAGCGAUACAUCGUUAUCGCUCGACCAGGGAUCCUAUUCGAUGAGCCUUGCCGAUGUAUAUCGAUUGAAAUAGCAGGACCGUUUUUCGUUUAA .(((.((((((((((....((((.((((((((((......))))))))...(((((.((.........)).))))).)).))))......(((......))))))))))))).)))... ( -35.00) >DroEre_CAF1 5037 119 - 1 CAACCGAAGACGGUCACACUACAGCGGGGCGAUAGAUCAUUAUCGCUCGACCAGGGAUUCUAUACGAUGAGCUUUGCCGAUGUAUAUCGAUUGCAAUAGCGAUACCGUUCAUCGUUUAU .....(((..(((((.(.(....).)(((((((((....)))))))))))))..)..)))((.(((((((((.....((((....))))(((((....)))))...))))))))).)). ( -35.60) >DroYak_CAF1 4900 119 - 1 CAACCGAAGACGGUCACACUACAUCGGGGCGAUAGAUCGUUAUCGCUCGACCAGGGAUUCUAUACGAUGAGCUUUGCCGAUGUAUAUCGAUUGCAAUAGCAAGACCGUUCAUCGGUUAU .((((((.(((((((....((((((((((((((((....))))))))....(((((.(((........))))))))))))))))......((((....)))))))))))..)))))).. ( -46.10) >consensus CAACCGAAGACGGUCACACUACAGCGGAGCGAUAGAUCGUUAUCGCUCGACCAGGGAUCCUAUACGAUGAGCCUUGCCGAUGUAUAUCGAUUGAAAUAGCAAGACCGUUUUUCGUUUAA ....(((((((((((....((((.(((((((((((....)))))))))...(((((...............))))).)).))))......(((......)))))))).))))))..... (-29.16 = -29.32 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:45 2006