Locus 5090

Sequence ID 3L_DroMel_CAF1
Location 13,958,335 – 13,958,449
Length 114
Max. P 0.500000
window8064

overview

Window 4

Location 13,958,335 – 13,958,449
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 94.56
Mean single sequence MFE -25.41
Consensus MFE -22.57
Energy contribution -22.85
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -1.13
Structure conservation index 0.89
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13958335 114 - 23771897
CCGUACAAGAAAACGCAAUUAAAAGUGCAUUAAAAAUUAAACGAAAAGUGCUUGUGUGUGCGUGCCAGUGAGGCAAAAAGUUUUGCCUGCGCCGAAUUGGCCAAAGUUAAAUGU
............(((((.....(((..(...................)..))).....)))))((((((((((((((....))))))).))).....))))............. ( -26.11)
>DroSec_CAF1 13869 114 - 1
CCGUACAAGAAAACGCAAUUAAAAGUGCAUUAAAAAUUAAACGAAAAGUGCUUGUGUGUGCGAGCCAGUGAGGCUAAAAGUUUUGCCUGCCCCGAAUUGGCAAAAGUUAAAUGU
.............((((.....(((..(...................)..))).....))))((((.....))))..((.(((((((...........))))))).))...... ( -24.01)
>DroSim_CAF1 13951 114 - 1
CCGUACAAGAAAACGCAAUUAAAAGUGCAUUAAAAAUUAAACGAAAAGUGCUUGUGUGUGCGUGCCAGUGAGGCUAAAAGUUUUGCCUGCCCCGAAUUGGCAAAAGUUAAAUGU
............(((((.....(((..(...................)..))).....)))))(((.....)))...((.(((((((...........))))))).))...... ( -23.61)
>DroEre_CAF1 14243 114 - 1
CCGUUGAAGAAAACGCAAUUAAAAGUGCAUUAAAAAUUAAACGAAUAGUGUUUGUGUGUGCGUGCCAAUGAGGCAAAAACUUUUGCCUGCGCUAAAUUGGCAAAAGUUAAAUGU
.((((......)))).........(..(((((((.((((......)))).)))).)))..).((((.....))))..((((((((((...........))))))))))...... ( -26.30)
>DroYak_CAF1 14420 114 - 1
CCGUGAAAGAAAACGCAAUUAAAAGUGCAUUAAAAAUUAAACGAAUAGUGCUUGUGUGUGCGUGCCAGUGAGGCAAAAAGUUUUGCCUGCGCCAAAUUGGCAAAAGUUAAAUGU
............(((((.....(((..(...................)..))).....)))))((((((((((((((....))))))).))).....))))............. ( -27.01)
>consensus
CCGUACAAGAAAACGCAAUUAAAAGUGCAUUAAAAAUUAAACGAAAAGUGCUUGUGUGUGCGUGCCAGUGAGGCAAAAAGUUUUGCCUGCGCCGAAUUGGCAAAAGUUAAAUGU
............(((((.....(((..(...................)..))).....)))))((((((.(((((((....))))))).......))))))............. (-22.57 = -22.85 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:43 2006