Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,501,694 – 1,501,786 |
Length | 92 |
Max. P | 0.649888 |
Location | 1,501,694 – 1,501,786 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 87.31 |
Mean single sequence MFE | -27.46 |
Consensus MFE | -26.64 |
Energy contribution | -25.96 |
Covariance contribution | -0.68 |
Combinations/Pair | 1.21 |
Mean z-score | -1.30 |
Structure conservation index | 0.97 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649888 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1501694 92 - 23771897 CUGUCGUUUUUAGUAGCAACAAAGGUGUUCUCGGGGUGUUUCUGGCGAGGAAGUGGAAACUCUGAGUAUAUCUGGCAGCUGGAAGUGGG-------AAA .(.(((((((((((.((.....((((((.((((((((.(((((.....))))).....)))))))).)))))).)).))))))))))).-------).. ( -28.10) >DroSec_CAF1 6754 92 - 1 CUGUCGUUUUUAGUAGCAACAAAGGUGUUCUCGGGGUGUUUCUGGCGAGGAAGUGGAAACUCUGAGUAUAUCUGGCAGCUGCAAGUGGG-------AAA ...((.(.(((.(((((.....((((((.((((((((.(((((.....))))).....)))))))).))))))....)))))))).).)-------).. ( -25.50) >DroSim_CAF1 6774 92 - 1 CUGUCGUUUUUAGUAGCAACAAAGGUGUUCUUGGGGUGUUUCUGGCGGGGAAGUGAAAACUCUGAGUAUAUCUGGCAGCUGGAAGUGAG-------AAA .(.(((((((((((.((.....((((((.((..((((.((((..((......))))))))))..)).)))))).)).))))))))))).-------).. ( -27.00) >DroEre_CAF1 6479 99 - 1 CUGUCGUUUUUAGUAGCAACAAAGGUGUUCUCGGGGCGAUUCUGGCGGGGAAGUAGCAACUCUGAGUAUAUCUGGCGGCUGGAAGUGGGAAGUGUCAAG .(.(((((((((((.((.....((((((.((((((((..((((.....))))...))...)))))).)))))).)).))))))))))).)......... ( -25.90) >DroYak_CAF1 6536 99 - 1 CUGACGUUUUUAGUAGCAACAAGGGUGUUCUCAGGGUGUUUCUGGCGGGUAGGUAGCAACUCUGAGUAUAUCUGGCGGCUGGAAGUGUGAAGUGGGAGA .(.(((((((((((.((.....((((((.(((((((((((((((.....)))).))).)))))))).)))))).)).))))))))))).)......... ( -30.80) >consensus CUGUCGUUUUUAGUAGCAACAAAGGUGUUCUCGGGGUGUUUCUGGCGGGGAAGUGGAAACUCUGAGUAUAUCUGGCAGCUGGAAGUGGG_______AAA ...(((((((((((.((.....((((((.((((((((....((........)).....)))))))).)))))).)).)))))))))))........... (-26.64 = -25.96 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:51 2006