Locus 509

Sequence ID 3L_DroMel_CAF1
Location 1,501,694 – 1,501,786
Length 92
Max. P 0.649888
window764

overview

Window 4

Location 1,501,694 – 1,501,786
Length 92
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 87.31
Mean single sequence MFE -27.46
Consensus MFE -26.64
Energy contribution -25.96
Covariance contribution -0.68
Combinations/Pair 1.21
Mean z-score -1.30
Structure conservation index 0.97
SVM decision value 0.24
SVM RNA-class probability 0.649888
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1501694 92 - 23771897
CUGUCGUUUUUAGUAGCAACAAAGGUGUUCUCGGGGUGUUUCUGGCGAGGAAGUGGAAACUCUGAGUAUAUCUGGCAGCUGGAAGUGGG-------AAA
.(.(((((((((((.((.....((((((.((((((((.(((((.....))))).....)))))))).)))))).)).))))))))))).-------).. ( -28.10)
>DroSec_CAF1 6754 92 - 1
CUGUCGUUUUUAGUAGCAACAAAGGUGUUCUCGGGGUGUUUCUGGCGAGGAAGUGGAAACUCUGAGUAUAUCUGGCAGCUGCAAGUGGG-------AAA
...((.(.(((.(((((.....((((((.((((((((.(((((.....))))).....)))))))).))))))....)))))))).).)-------).. ( -25.50)
>DroSim_CAF1 6774 92 - 1
CUGUCGUUUUUAGUAGCAACAAAGGUGUUCUUGGGGUGUUUCUGGCGGGGAAGUGAAAACUCUGAGUAUAUCUGGCAGCUGGAAGUGAG-------AAA
.(.(((((((((((.((.....((((((.((..((((.((((..((......))))))))))..)).)))))).)).))))))))))).-------).. ( -27.00)
>DroEre_CAF1 6479 99 - 1
CUGUCGUUUUUAGUAGCAACAAAGGUGUUCUCGGGGCGAUUCUGGCGGGGAAGUAGCAACUCUGAGUAUAUCUGGCGGCUGGAAGUGGGAAGUGUCAAG
.(.(((((((((((.((.....((((((.((((((((..((((.....))))...))...)))))).)))))).)).))))))))))).)......... ( -25.90)
>DroYak_CAF1 6536 99 - 1
CUGACGUUUUUAGUAGCAACAAGGGUGUUCUCAGGGUGUUUCUGGCGGGUAGGUAGCAACUCUGAGUAUAUCUGGCGGCUGGAAGUGUGAAGUGGGAGA
.(.(((((((((((.((.....((((((.(((((((((((((((.....)))).))).)))))))).)))))).)).))))))))))).)......... ( -30.80)
>consensus
CUGUCGUUUUUAGUAGCAACAAAGGUGUUCUCGGGGUGUUUCUGGCGGGGAAGUGGAAACUCUGAGUAUAUCUGGCAGCUGGAAGUGGG_______AAA
...(((((((((((.((.....((((((.((((((((....((........)).....)))))))).)))))).)).)))))))))))........... (-26.64 = -25.96 +  -0.68) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:51 2006