Locus 5089

Sequence ID 3L_DroMel_CAF1
Location 13,957,363 – 13,957,481
Length 118
Max. P 0.529049
window8063

overview

Window 3

Location 13,957,363 – 13,957,481
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.04
Mean single sequence MFE -23.36
Consensus MFE -18.02
Energy contribution -18.70
Covariance contribution 0.68
Combinations/Pair 1.11
Mean z-score -1.51
Structure conservation index 0.77
SVM decision value -0.01
SVM RNA-class probability 0.529049
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13957363 118 + 23771897
CCCGUAAAAGUAUGCUACCAAAACGAACUAUUCGCCAGUUUUGCGAGAGAUUAAAACGUGAGAAAAUUAAAAAAUGUUUUUUGGCAAACUUUUGAAAAGGGCUCAUAAAUAAGAA--AGU
(((.(((((((.(((((..((((((..((.(((((.......))))))).......(....)............)))))).))))).)))))))....)))..............--... ( -24.80)
>DroSec_CAF1 12884 117 + 1
CCCGUAAAAGUAUGCUACCAAAACGAACUAUUCGCCAGUUUUGCGAGAGAUUAAAACGUGAGAAAAUUAAAAAAUGUUU-UUGGCAAACUUUUGAGAAGGGCUCAUAUAUCAGAA--AGU
(((.(((((((.(((((..((((((..((.(((((.......))))))).......(....)............)))))-)))))).)))))))....)))..............--... ( -24.70)
>DroSim_CAF1 12984 118 + 1
CCCGUAAAAGUAUGCUACCAAAACGAACUAUUCGCCAGUUUUGCGAGAGAUUAAAACGUGAGAAAAUUAAAAAAUGUUUUUUGGCAAACUUUUGAGAAGGGCUCAUAAAUAAAAA--AGU
(((.(((((((.(((((..((((((..((.(((((.......))))))).......(....)............)))))).))))).)))))))....)))..............--... ( -24.80)
>DroEre_CAF1 13172 120 + 1
CCCGUAAAAGUAUGCUACAAAAACGAACUAUUCGCCAGCUUUGCGAGAGAUUAAAACGUGAGAAAAUUAAAAAGAAUUUUUUGCCAAGCUUUAGAGAAGGGAUCAUAAAUAAGAAAUAGU
((((((......)))...............(((...(((((.((((((((((......(((.....))).....)))))))))).)))))...)))..)))................... ( -21.70)
>DroYak_CAF1 13397 119 + 1
CCCGUAAAAGUAUGCUACAAAAACGAACUAUUCGCCAGCUUUACGAGAGAUUAAAACGUGAGAAAAUUAAAACGCGUUU-UUGGCAAACUUUAGAGGAGGGAUCAUAAAUAAGAAAUAGU
(((.(.(((((.(((..((((((((..((.((((.........)))))).......(....)............)))))-)))))).))))).)....)))................... ( -20.80)
>consensus
CCCGUAAAAGUAUGCUACCAAAACGAACUAUUCGCCAGUUUUGCGAGAGAUUAAAACGUGAGAAAAUUAAAAAAUGUUUUUUGGCAAACUUUUGAGAAGGGCUCAUAAAUAAGAA__AGU
(((.(((((((.(((((..........((.(((((.......)))))))....((((((..............))))))..))))).)))))))....)))................... (-18.02 = -18.70 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:42 2006