| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,956,703 – 13,956,794 |
| Length | 91 |
| Max. P | 0.649757 |
| Location | 13,956,703 – 13,956,794 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 83.95 |
| Mean single sequence MFE | -30.80 |
| Consensus MFE | -21.49 |
| Energy contribution | -22.43 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649757 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13956703 91 - 23771897 GCUCUCUCCGACUUGCUCCUCUCAGAGAGGAAGAGAGGCAGAGAGCGGGCCAAGCAAGCUUCGGCGAUGCAGAAUGCAGGAUGAUGUUUGC (((((((((..(((..(((((.....))))).))).)).))))))).......((((((.(((....(((.....)))...))).)))))) ( -36.70) >DroSec_CAF1 12233 91 - 1 GCUCUCUACGACUUUCUCUUCUCGGAGAGGAAGAGAGACAGAGAGAGAGAGGGACAAGCUUCGGCGAUGCAGAAUGCAGGAUGAUGUUUGC .((((((.....((((((((((......)))))))))).....))))))..(((((.((....))..(((.....)))......))))).. ( -30.20) >DroEre_CAF1 12517 87 - 1 GCUCUCUCUGAAAUUCUCUUCUCGGAGAGGGAGAGAGACAGUAAG----AUUGCCAGGCUUCGGCGAUGCAGAAUGCAGGAUGAUGUUUGC .((((((((....((((((....))))))))))))))...(((((----((((((..((....))..(((.....))))).)))).))))) ( -27.10) >DroYak_CAF1 12738 87 - 1 GCUCUCUCCGACUUUCUCUUCUCUGCGAGGGAGAGGGACAGAGAA----AGGGGCAAGCUUCGGCGAUGCAGAAUGCAGGAUGAUGUUUGC .((((.(((..(((((((((......)))))))))))).))))..----....((((((.(((....(((.....)))...))).)))))) ( -29.20) >consensus GCUCUCUCCGACUUUCUCUUCUCGGAGAGGAAGAGAGACAGAGAG____AGGGGCAAGCUUCGGCGAUGCAGAAUGCAGGAUGAUGUUUGC .((((((((....(((((......)))))))))))))................((((((.(((....(((.....)))...))).)))))) (-21.49 = -22.43 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:39 2006