Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,955,753 – 13,955,872 |
Length | 119 |
Max. P | 0.618703 |
Location | 13,955,753 – 13,955,872 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.93 |
Mean single sequence MFE | -31.90 |
Consensus MFE | -24.28 |
Energy contribution | -24.23 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.24 |
Mean z-score | -2.72 |
Structure conservation index | 0.76 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618703 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13955753 119 - 23771897 UUUCUUUGGAGUGAGCAAACUUUUAGUUUCCCUGCCCUCAGCCACUUUUUGCCGCACCGAAGGAAUGGAAAAUAAAUUGCCCUCGAGAAAAUGCAAAUUGUUUUUCAAAUUAUACAU-CC (((((((((.(((.(((((.....(((....(((....)))..))).)))))))).)))))))))((((((((((.((((............)))).))))))))))..........-.. ( -28.40) >DroSec_CAF1 11262 119 - 1 UUUCUUUGGAGUGCGGAAACUUUUAGUUUCCCUGCUCUCUGCCACUUUUUGCCGCUCCGAAGGAAUGGAAAAUGAAUUGCCCUCGAGGAAAUGCAAAUUGUUUUUCAAAUUAUACAU-CC ((((((((((((((((((((.....))))))..((.....))........).)))))))))))))(((((((..(.((((((....))....)))).)..)))))))..........-.. ( -36.60) >DroSim_CAF1 11376 119 - 1 UUUCUUUGGAGUGCGGAAACUUUUAGUUUCCCUGCUCUCUGCCACUUUUUGCCGCUCCGAAGGAAUGGAAAAUGAAUUGCCCUCGAGGAAAUGCAAAUUGUUUUUCAAAUUAUACAU-CC ((((((((((((((((((((.....))))))..((.....))........).)))))))))))))(((((((..(.((((((....))....)))).)..)))))))..........-.. ( -36.60) >DroEre_CAF1 11558 119 - 1 UUUCUUUGGAGUGCGGAAACUUUUAGUUUCCCUGCUCUCUGCCACUUUUUGCGGCUUCGAAGAAAUGGAAAAUAAAUUGCCUCCGAGGAAAUGCAAAUUGUUUUUCAAAUUAUACAU-CC (((((((((((((.((((((.....)))))).)))))...(((.(.....).)))..))))))))((((((((((.((((.((....))...)))).))))))))))..........-.. ( -36.60) >DroYak_CAF1 11903 119 - 1 UUUCUUGGGAGUGCGGAAACUUUUAGUUUCCCUGCUCUCUGCCACUUUUUGCCGCACCGAAGGAAUGGAAAAUAAAUUGCCCUCGAGGAAAUGCAAAUUGUUUUUCAAAUUAUACAU-CC (((((((((((((.((((((.....)))))).)))))))(((..(.....)..)))...))))))((((((((((.((((((....))....)))).))))))))))..........-.. ( -31.70) >DroAna_CAF1 10578 107 - 1 UUUCUUUUGAGUGCGGAAACUUUUAGUUUCUCU-----CU---ACUU----CAGCCCGAGAAGAAUAGA-AAUAAAUUGCUGUAAAGGAAAUGCAAAUUGUUUUCCAAAUUAUGCAGCCC (((((((((...((((((((.....)))))).(-----((---((((----(.......))))..))))-........))..)))))))))((((((((........)))).)))).... ( -21.50) >consensus UUUCUUUGGAGUGCGGAAACUUUUAGUUUCCCUGCUCUCUGCCACUUUUUGCCGCUCCGAAGGAAUGGAAAAUAAAUUGCCCUCGAGGAAAUGCAAAUUGUUUUUCAAAUUAUACAU_CC (((((((((.(((.((((((.....))))))..((.....))..........))).)))))))))((((((((((.((((............)))).))))))))))............. (-24.28 = -24.23 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:38 2006