Locus 5085

Sequence ID 3L_DroMel_CAF1
Location 13,954,347 – 13,954,446
Length 99
Max. P 0.723082
window8058

overview

Window 8

Location 13,954,347 – 13,954,446
Length 99
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 89.19
Mean single sequence MFE -31.69
Consensus MFE -26.87
Energy contribution -27.82
Covariance contribution 0.95
Combinations/Pair 1.21
Mean z-score -1.83
Structure conservation index 0.85
SVM decision value 0.40
SVM RNA-class probability 0.723082
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13954347 99 + 23771897
UCGGCCACCACAAUGGGACCAUUGUUUUCGAUUUCAAUGCCGACAUUCUGGCAGUGGCACUGCCAACAGAAAUCCCGUGUAUC-CAGUGCACUGCGGCCC
..((((...((((((....))))))....((((((..(((((......))))).((((...))))...))))))..((((((.-..))))))...)))). ( -33.80)
>DroSec_CAF1 9958 99 + 1
UCGACCGCCACAAUGGGCCCAUUGUUUUCGAUUUCAAUGCCGACAUUCUGGCAGUGGUAUUGCCAACAGAAAUCCCGUGUAUC-CAGUGCACUGCGGCCC
....((((.((((((....))))))....((((((..(((((......))))).(((.....)))...))))))..((((((.-..)))))).))))... ( -30.40)
>DroSim_CAF1 10072 100 + 1
UCGGCCGCCACAAUGGGCCCAUUGUUUUCGAUUUCAAUGCCGACAUUCUGGCAGUGGCAUUGCCAACAGAAAUCCCGUGUAUCCCAGUGUACUGCGGCCC
..((((((.(((.((((..(((.(.....((((((..(((((......))))).((((...))))...))))))).)))...)))).)))...)))))). ( -35.40)
>DroEre_CAF1 10271 99 + 1
UCGGCUGCCACAAUGGGUCCAUUGUUUUCGAUUUCAAUGCCGACAUUCUGGCAGUGGCAUUGCCAACAGAAAUCCCGUGUAUC-CAGUGCACUGCGGCCC
..((((((.((((((....))))))....((((((..(((((......))))).((((...))))...))))))..((((((.-..)))))).)))))). ( -36.20)
>DroYak_CAF1 10544 99 + 1
UCGGCUGCCACAAUGGGUCCAUUGUUUUCGAUUUCAGUGCCGACAUUCUGGCAGUGGCACUGCCAACAGAAAUCCCGUGUAUC-CAGUGCACUGCGGCCC
..((((((.((((((....))))))....((((((..(((((......))))).((((...))))...))))))..((((((.-..)))))).)))))). ( -36.10)
>DroAna_CAF1 9336 99 + 1
UCGACUGCCGCAAUGGAUCCUUUGUUUUCAAAUUCAAAGCCAGUAUCCUGACAGUGGCAUUGCCAACUAAAAUCCCGUGUAUC-UAGUGCAGCAUGCCUC
...((((...((..((((.((..(((((.......))))).)).)))))).))))(((((.((..((((..............-))))...))))))).. ( -18.24)
>consensus
UCGGCCGCCACAAUGGGUCCAUUGUUUUCGAUUUCAAUGCCGACAUUCUGGCAGUGGCAUUGCCAACAGAAAUCCCGUGUAUC_CAGUGCACUGCGGCCC
..((((((.((((((....))))))....((((((..(((((......))))).((((...))))...))))))..((((((....)))))).)))))). (-26.87 = -27.82 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:37 2006