Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,937,710 – 13,937,826 |
Length | 116 |
Max. P | 0.805557 |
Location | 13,937,710 – 13,937,826 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 91.70 |
Mean single sequence MFE | -21.32 |
Consensus MFE | -17.10 |
Energy contribution | -16.78 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.14 |
Mean z-score | -1.67 |
Structure conservation index | 0.80 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13937710 116 + 23771897 GAUCAUACUUGUAAUUUCAUGAGGUGCACAGUAUAUUACAAUUCCCUUUGUACCCCAAUGAAAAUUAUAAACUUCGGCUCUGCUGAUGUGCUAUAUACAUACAUAUUAUAUAGAUU ........((((((((((((..((((((.((..............)).))))))...))).)))))))))((.(((((...))))).)).(((((((.........)))))))... ( -22.84) >DroSec_CAF1 45845 116 + 1 GAUCAUACUUGUAAUUUCAUGAGGUGCACAGUAUAUUACAAUUCCCUUUGUAUCCUAAUGAAAAUUAUAAACUUCGGCUCUGCUGAUGUGCUAUAUACAUACAUAUUAUAUAGAUU ........((((((((((((.(((((((.((..............)).)))).))).))).)))))))))((.(((((...))))).)).(((((((.........)))))))... ( -21.34) >DroSim_CAF1 46536 116 + 1 GAUCAUACUUGUAAUUUCAUGAGGUGCACAGUAUAUUACAAUUCCCUUUGUAUCCUAAUGAAAAUUAUAAACUUCGGCUCUGCUGAUGUGCUAUAUACAUACAUAUUAUAUAGAUU ........((((((((((((.(((((((.((..............)).)))).))).))).)))))))))((.(((((...))))).)).(((((((.........)))))))... ( -21.34) >DroEre_CAF1 45178 112 + 1 GAUCACACUUGUAAUUUCAUGAGGUGCACAGUAUAUUACUAUACCCUUUGUAUCCUAAAGAAAAUUAUAAGCUUCAGCUCUGCUGAUGUGCUAUAUACAUAAA----AAAUACAUU ...(((((((((((((((...(((((((.((..(((....)))..)).)))).)))...).))))))))))..(((((...))))))))).............----......... ( -22.40) >DroYak_CAF1 47490 112 + 1 UAUCAUUCUUGUAAUUUCAUGAGGUGCACAGUAUAUAACUAUACCUUUUGUAUCCUAAAGAAAAUUAUAAACUUCAGCUCUGCUGAUGUGCUAUAUACAUAAA----AUAUACAUU .........((((.((((...(((((((..(((((....)))))....)))).)))...))))..((((.((.(((((...))))).))..))))))))....----......... ( -18.70) >consensus GAUCAUACUUGUAAUUUCAUGAGGUGCACAGUAUAUUACAAUUCCCUUUGUAUCCUAAUGAAAAUUAUAAACUUCGGCUCUGCUGAUGUGCUAUAUACAUACAUAUUAUAUAGAUU .........((((.((((((..((((((.((..............)).))))))...))))))..((((.((.(((((...))))).))..))))))))................. (-17.10 = -16.78 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:28 2006