| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,497,834 – 1,497,929 |
| Length | 95 |
| Max. P | 0.903803 |
| Location | 1,497,834 – 1,497,929 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 75.90 |
| Mean single sequence MFE | -23.65 |
| Consensus MFE | -14.44 |
| Energy contribution | -15.53 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.903803 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1497834 95 + 23771897 ----------UAAUCAAUA-GCAACCUUGAAAUUUGUACACAAAAACAUGGCCAACCCAGGUUCGGUGUGCAAAAUAAUGGUGGCCAGAUUUGAUAAGCGCUGAUC ----------..(((((..-((.(((......(((((((((...(((.(((.....))).)))..))))))))).....))).)).....)))))........... ( -22.50) >DroSec_CAF1 2921 98 + 1 AUCAGCUCCCUAAUCAAUA-GCAACCUUGAAAUUUGUACACAAAAACAUGGCCGCGCCAAGUUCGGUGUGCAAAAUAAAGGUGGUCAGAUUUGAUAA-------UC ............(((((..-((.(((((....(((((((((...(((.((((...)))).)))..)))))))))...))))).)).....)))))..-------.. ( -26.60) >DroSim_CAF1 2930 98 + 1 AUCAGCUCCCUAAUCAAUA-GCAACCUUGAAAUUUGUACACAAAAACAUGGCCGCCCCGGGUUCGGUGUGCAAAAUAAUGGUGGUCAGAUUUGAUAA-------UC ............(((((..-((.(((......(((((((((...(((.(((.....))).)))..))))))))).....))).)).....)))))..-------.. ( -20.20) >DroEre_CAF1 2851 105 + 1 AUCAGAUCCCUAAUCAAUA-GCAACCUUGAAAUUUGUAUACAAAAACAUGGCCACCUCAAGUUCGGUGUGCAAAACAAUGGGGGCCAGAUUUGAUAAGAGGUGGUC ....(((((((.(((((..-((..(((((...(((((((((...(((.(((.....))).)))..))))))))).))).))..)).....)))))...))).)))) ( -26.70) >DroYak_CAF1 2979 105 + 1 AUCAGCUCCCUAAUCAAUG-GCAACCUUGAAAUUUGUACACAAAAACAUGGCCGCCUCAAGUUCGGUGUGCAAAACAAUGGUGGCCAGAUUUGAUAAGAGGUGAUC ((((.(((....(((((((-((.((((((...(((((((((...(((.(((.....))).)))..))))))))).))).))).))))...)))))..))).)))). ( -32.60) >DroAna_CAF1 3585 83 + 1 -------CUCUAAUCAAUAAGUAACCUUCAAACUCUAACACAAAAGU------CCCAAAGAUUUGAUAAGCAAACAAAUGGCGG--AGAUUUGGGA--------CC -------......................................((------((((((..((((................)))--)..)))))))--------). ( -13.29) >consensus AUCAGCUCCCUAAUCAAUA_GCAACCUUGAAAUUUGUACACAAAAACAUGGCCGCCCCAAGUUCGGUGUGCAAAAUAAUGGUGGCCAGAUUUGAUAA_______UC ............(((((...((.(((......(((((((((...(((.(((.....))).)))..))))))))).....))).)).....)))))........... (-14.44 = -15.53 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:50 2006