| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,933,663 – 13,933,754 |
| Length | 91 |
| Max. P | 0.510719 |
| Location | 13,933,663 – 13,933,754 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 72.86 |
| Mean single sequence MFE | -16.14 |
| Consensus MFE | -0.68 |
| Energy contribution | -1.80 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.04 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.510719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13933663 91 - 23771897 UUAAAGGUCAUCGCAUCCAAACAGGAUGUCAUCAUCAAUGUCCAAGUCAAAGUUAUUCUCAUCGGCCACUAAAAUAUCCUCCAUUUCAUAG .....((((...((((((.....))))))(((.....))).......................))))........................ ( -12.30) >DroSec_CAF1 41825 91 - 1 UUAAAGGUCAUUGCAUCCCAAUAUUAUGUCCCCAUCAAUGUCCAGUUCAAAGCUAUUCUCAUCGGCCAGUAAAAUAUCCUCCAUUUCCUCG .....((((...........((((((((....))).)))))..(((.....))).........))))........................ ( -7.10) >DroSim_CAF1 42168 91 - 1 UUAAAGGUCAUUGCAUCCGAACAUUAGGUCCCCAUCAAUGUCCAGUUCAAAGCUAUUCUCAUCGGCCAGUAAAAUAUCCUCCAUUUCCUCG ....(((...((((..(((((((((.(((....))))))))..(((.....))).......))))...)))).....)))........... ( -10.20) >DroYak_CAF1 43506 91 - 1 UUAAAAAUCAUCGCCUCCAAUCAGGACAUCCUCAUUAAUCACCAGUUCAAAAUUAUCCUCAUCGGAUAAUAAGGUGUCCUCGAUCUCCUCU ...................(((((((((((......(((.....)))....(((((((.....)))))))..)))))))).)))....... ( -16.20) >DroAna_CAF1 44149 88 - 1 UCAGAAGUCCUC---UCCGAUGAGGACAUCCUCGUCGAUGACCAGGUCGUAGCUCUCAUCAUCGGAUACGACCGUGUCGUCGAUCUCAUUC ...((.((((((---......)))))).))...(((((((((..(((((((..((........)).)))))))..)))))))))....... ( -34.90) >consensus UUAAAGGUCAUCGCAUCCAAACAGGACGUCCUCAUCAAUGUCCAGUUCAAAGCUAUUCUCAUCGGCCACUAAAAUAUCCUCCAUUUCCUCG .....((((..............((((((........))))))(((.....))).........))))........................ ( -0.68 = -1.80 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:26 2006