Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,932,844 – 13,932,963 |
Length | 119 |
Max. P | 0.645938 |
Location | 13,932,844 – 13,932,963 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 73.22 |
Mean single sequence MFE | -30.55 |
Consensus MFE | -14.88 |
Energy contribution | -16.25 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.38 |
Mean z-score | -1.72 |
Structure conservation index | 0.49 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645938 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13932844 119 - 23771897 AAGUGUAGUAUGAACUUAUGAAGUCCUGGCAAAACUUUAAACCAUUAGUCCCACCGCCUUGAAGUUGUUGAGACUUCGGAAUAUUAUCAACAGCUUCUGUACUUUCCCCCAACUGCACA ..(((((((.((.......((((((..((((..(((((((..................)))))))))))..))))))((((........((((...))))...))))..))))))))). ( -26.97) >DroSec_CAF1 40994 119 - 1 UAGUGUAGUAUAAGCUUAUGAAGCGUUGGCAAAACUCUAAACCAUUAGUUCCACCGCCUUGAAGUUGUUGAAACUUCGGAAGAUUAUCAACAGCUUCUGUACUUUCCCCCAACUGCACG ..(((((((.............(((.(((...((((..........))))))).)))...(((((((((((....((....))...)))))))))))..............))))))). ( -34.00) >DroSim_CAF1 41328 119 - 1 UACUGUAGUAUAAGCUUAUGAAGCGUUGGCAAAACUCUAUACCAUUGGUUCCACCGCCUUGAAGUUGUUGAAACUUCGGAAGAUUAUCAACAGCUUCUGUACUUUCCCCCAACUGCACG ...((((((.............(((.(((...((((..........))))))).)))...(((((((((((....((....))...)))))))))))..............)))))).. ( -30.00) >DroEre_CAF1 40327 119 - 1 UAUUGUAGUACGAACUUAUGAAGCGUUGGCAAAACAUUAAGCCAUUAGUGCCACCGCUUUGAAGUCGUUCAAACUUCGGAAGAUUAUCAACAACUUUUGUAUUUUCCUCAGACUGCACG ...((((((((((.(((.(((((((.(((((.....((((....))))))))).)))))))))))))).....((..(((((((...(((......))).)))))))..)))))))).. ( -31.70) >DroYak_CAF1 42666 119 - 1 UUUUGUAGUACGAACUUAUGAAGCGUUGGCAAAACAUUAAACCAUUAGUCCCACCGCUUUGCAGUCGUUGAAACUUCGGAAGCUCAUCAACCACUAUUGUAUUUUCCUCUGAAUGUACG .......(((((.......((((((.(((......(((((....))))).))).))))))..(((.(((((.....(....)....))))).)))..................))))). ( -20.60) >DroAna_CAF1 43342 110 - 1 AGCUGUAGUAGGCAGCUACAAAGGAGAGGCAAAAGUCCAUUCUGGAGGUCCCUGCACUCUGCAGUCUCUGGGGACUGGG--------CAACGGACAUU-UCUUAGCCUUGGGCAGCACA .(((((...((((.(((.(......).)))....((((.(((..((((...((((.....))))))))..)))....(.--------...)))))...-.....))))...)))))... ( -40.00) >consensus UACUGUAGUAUGAACUUAUGAAGCGUUGGCAAAACUCUAAACCAUUAGUCCCACCGCCUUGAAGUCGUUGAAACUUCGGAAGAUUAUCAACAGCUUCUGUACUUUCCCCCAACUGCACG ...((((((.............(((.(((.......((((....))))..))).)))...(((((((((((....((....))...)))))))))))..............)))))).. (-14.88 = -16.25 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:26 2006