Locus 5077

Sequence ID 3L_DroMel_CAF1
Location 13,931,047 – 13,931,146
Length 99
Max. P 0.683749
window8045

overview

Window 5

Location 13,931,047 – 13,931,146
Length 99
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 80.85
Mean single sequence MFE -22.46
Consensus MFE -17.63
Energy contribution -17.97
Covariance contribution 0.34
Combinations/Pair 1.12
Mean z-score -1.36
Structure conservation index 0.79
SVM decision value 0.31
SVM RNA-class probability 0.683749
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13931047 99 + 23771897
UACCGUUGUCUUUCAAAGUGGCCGAUUGCCAUAAUUGGCAACAGCGCCAAUGUUAUUGUUACGGUAAUUAAUCAAGUCUCAAUACGCACA--------CACACA--CAC
((((((............(((((..((((((....))))))..).))))...........))))))........................--------......--... ( -23.00)
>DroPse_CAF1 40178 98 + 1
UUCCGUGGUCGUCC-AAGUGGUU-UUCGCCAUAAUUGGCAA--GCGCCAAUGUUAUUGUUGCGGUAAUUAAUCAACUGACACA-CACAGA----CUCACAUCCA--UAU
....((((((....-..(((((.-...))))).((((((..--..)))))).....(((((((((.........)))).)).)-))..))----).))).....--... ( -21.90)
>DroSec_CAF1 39282 101 + 1
UACCGUUGUCUUUCAAAGUGGCCGAUUGCCAUAAUUGGCAACAUCGCCAAUGUUAUUGUUACGGUAAUUAAUCAAGUCUCAAAACGCACA--------CACACAUAUAC
((((((............((((.((((((((....)))))..)))))))...........))))))........................--------........... ( -21.70)
>DroEre_CAF1 38601 102 + 1
UACCGCUGUCUUUCAAAGUGGCCGAUUGCCAUAAUUGGCAACAGCGCCAAUGUUAUUGUUACGGUAAUUAAUCAAGUCUCAAA-CGCACA----UACACAUGCA--CAC
(((((.((..........(((((..((((((....))))))..).))))..........))))))).................-.(((..----......))).--... ( -22.85)
>DroYak_CAF1 40813 106 + 1
UACCGCUGUCUUUUAAAGUGGCCGAUUGCCAUAAUUGGCAGCAGCGCCAAUGUUAUUGUUACGGUAAUUAAUCAAGUCUCAAA-GGCACACUUACACACACACA--CAC
(((((.((.(...(((..(((((..((((((....))))))..).))))...)))..).))))))).........(((.....-))).................--... ( -23.40)
>DroPer_CAF1 40443 98 + 1
UUCCGUGGUCGUCC-AAGUGGUU-UUCGCCAUAAUUGGCAA--GCGCCAAUGUUAUUGUUGCGGUAAUUAAUCAACUGACACA-CACAGA----CUCACAUCCA--UAU
....((((((....-..(((((.-...))))).((((((..--..)))))).....(((((((((.........)))).)).)-))..))----).))).....--... ( -21.90)
>consensus
UACCGUUGUCUUUCAAAGUGGCCGAUUGCCAUAAUUGGCAACAGCGCCAAUGUUAUUGUUACGGUAAUUAAUCAAGUCUCAAA_CGCACA____C_CACACACA__CAC
((((((...........(((((.....))))).((((((......)))))).........))))))........................................... (-17.63 = -17.97 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:24 2006