Locus 5074

Sequence ID 3L_DroMel_CAF1
Location 13,924,502 – 13,924,597
Length 95
Max. P 0.812050
window8041

overview

Window 1

Location 13,924,502 – 13,924,597
Length 95
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 93.95
Mean single sequence MFE -20.22
Consensus MFE -18.04
Energy contribution -18.28
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.33
Structure conservation index 0.89
SVM decision value 0.65
SVM RNA-class probability 0.812050
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13924502 95 - 23771897
UACUAAUUGCUUAGUUAUUUGCAUUUUCAAUUGGCUGCAAGCCGGCCAAGUUGUAAAAUAAGUGAGUAAA-AACAAAAGAUCUGCCAG---UACCACCU
......(((((((.(((((((((.......(((((((.....)))))))..))).)))))).))))))).-.................---........ ( -20.50)
>DroSec_CAF1 32701 95 - 1
UACUAAUUGUUUAGUUAUUUGCAUUUUCAAUUGGCUGCAAGCCGGCCAAGAUGCAAAAUAAGUGAGUAAA-AACAAAAGAUCUGCCAG---UACCACCU
.(((((....)))))..((((((((.....(((((((.....)))))))))))))))....(((.(((..-..((.......))....---)))))).. ( -20.60)
>DroSim_CAF1 32909 96 - 1
UACUAAUUGUUUAGUUAUUUGCAUUUUCAAUUGGCUGCAAGCCGGCCAAGAUGCAAAAUAAGUGAGUAAAAAACAAAAGAUCUGCCAG---UACCACCU
.(((((....)))))..((((((((.....(((((((.....)))))))))))))))....(((.(((.....((.......))....---)))))).. ( -20.00)
>DroEre_CAF1 32038 98 - 1
UACUAAUUGUUUAGUUAUUUGCAUUUUCAAUUGGCUGCAGGCCGGCCAAGAUGCAAAAUAAGCGUGUAAA-AACAAAAGAUAAGCCAGAUCUACCACCU
(((....((((((....((((((((.....(((((((.....))))))))))))))).)))))).)))..-......((((.......))))....... ( -20.20)
>DroYak_CAF1 34187 98 - 1
UACUAAUUGUUUAGUUAUUUGCAUUUUCAAUUGGCUGCAAGCCGGCCAAGAUGCAAAAUAAGUGAGUAAA-AACAAAAGAUUUGCCAGACGUACCACCU
.(((((....)))))..((((((((.....(((((((.....)))))))))))))))....(((.(((..-..(((.....))).......)))))).. ( -19.80)
>consensus
UACUAAUUGUUUAGUUAUUUGCAUUUUCAAUUGGCUGCAAGCCGGCCAAGAUGCAAAAUAAGUGAGUAAA_AACAAAAGAUCUGCCAG___UACCACCU
......(((((...(((((((((((((((.(((((((.....)))))))..)).)))))..))))))))..)))))....................... (-18.04 = -18.28 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:20 2006