Locus 5073

Sequence ID 3L_DroMel_CAF1
Location 13,912,895 – 13,912,989
Length 94
Max. P 0.839543
window8040

overview

Window 0

Location 13,912,895 – 13,912,989
Length 94
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 86.28
Mean single sequence MFE -22.35
Consensus MFE -17.60
Energy contribution -17.80
Covariance contribution 0.20
Combinations/Pair 1.17
Mean z-score -2.82
Structure conservation index 0.79
SVM decision value 0.75
SVM RNA-class probability 0.839543
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13912895 94 + 23771897
UACACACACACACACACACCGCUGAUGAUGAUUUUUAAUGAAUUGCUGAAGGUGAAAGCAUUUUCACUUUCCAA-AAGCAAUUUUCGGUGUCAAA
...............((((((....(((......)))..((((((((((((((((((....))))))))))...-.)))))))).)))))).... ( -22.80)
>DroSec_CAF1 21087 88 + 1
UACACUCAC------ACUCUGCUGAUGAUGAUUUUUAAUGAAUUGCUGAAGGUGAAAGCAUUUUCACUUUCCAA-AAGCAAUUUUCGGUGUCAAA
.((((((((------(.((....)))).)))........((((((((((((((((((....))))))))))...-.))))))))...)))).... ( -20.40)
>DroSim_CAF1 21454 86 + 1
UACACACAC------A--CCGCUGAUGAUGAUUUUUAAUGAAUUGCUGAAGGUGAAAGCAUUUUCACUUUCCAA-AAGCAAUUUUCGGUGUCAAA
.......((------(--(((....(((......)))..((((((((((((((((((....))))))))))...-.)))))))).)))))).... ( -22.80)
>DroEre_CAF1 21384 86 + 1
UACACACACUC--------CACUGCUGAUGGUUUUUAAUGAAUUGCUGAAGGUGAAAGCAUUUUCACUUUCCAA-AAGCAAUUUUCGGUGUCAAA
.....((((((--------(((....).)))........((((((((((((((((((....))))))))))...-.))))))))..))))).... ( -20.90)
>DroYak_CAF1 22440 91 + 1
UACACACACUC---CACUCCACUGAUGAUGAUUUUUAAUGAAUUGCUGAAGGUGAAAGCAUUUUCACUUUCCAA-AGGCAAUUUUCGGUGUCAAA
...........---.....(((((((((......)))..((((((((((((((((((....))))))))))...-.))))))))))))))..... ( -21.60)
>DroAna_CAF1 24748 92 + 1
UACACAUAUUC---AGAGGCAUAUACGUAUGUUUUUAAUGAAUAGCAGAAGGUGAAAGCAUUUUCACUUUCCAAAAAGCAAUUUUUGGUGUCAAA
.((((.(((((---(((((((((....))))))))...))))))...((((((((((....))))))))))((((((....)))))))))).... ( -25.60)
>consensus
UACACACACUC____AC_CCACUGAUGAUGAUUUUUAAUGAAUUGCUGAAGGUGAAAGCAUUUUCACUUUCCAA_AAGCAAUUUUCGGUGUCAAA
...................((((((..............((((((((((((((((((....)))))))))).....))))))))))))))..... (-17.60 = -17.80 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:19 2006