| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,485,970 – 1,486,064 |
| Length | 94 |
| Max. P | 0.576557 |
| Location | 1,485,970 – 1,486,064 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 73.41 |
| Mean single sequence MFE | -17.64 |
| Consensus MFE | -2.24 |
| Energy contribution | -1.56 |
| Covariance contribution | -0.68 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.13 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.576557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1485970 94 - 23771897 AUUAAACAAAUCGUUGAGU-UGUGGACAAGAAAUCGCCACUAGAAUAACUGGAAAAAAGCGAAAAUGGUUAGUACUAGACAAACGCGACUCACUU ..............(((((-((((.........((((..((((.....))))......))))...((((....))))......)))))))))... ( -19.10) >DroSec_CAF1 132852 95 - 1 AUUAAACAGUUUAUAGCGUUUGUAGGCAACAAAUCGCCACUAGAAUAACUGGAAAAAAGCAAACAUGGUUAGUACUAGACAAACGCGACGUACUU .......(((.....((((((((.(((........))).((((..((((((..............))))))...)))))))))))).....))). ( -22.84) >DroSim_CAF1 130285 94 - 1 AUUAAACAAUUUAUAGCGU-UGUAGACAACAAAUCGCCACUAGAAUAACUGGAAAAAAGCAAACAUGGUUAGUACUAGGCAAACGCGACGUACUU ...............((((-(((.((.......))(((.((((.....)))).............((((....)))))))....))))))).... ( -16.60) >DroEre_CAF1 137713 94 - 1 AUUAAACAAACCACAGCGU-UGCGGACAACAAAUCGCCACUAGAACAUCCGAAAAACAGCGAGCAUGGUUAGUACUAGACAAACGCGACGCACCU ...............((((-((((.........((((.....................))))(..((((....))))..)...)))))))).... ( -19.90) >DroAna_CAF1 139973 85 - 1 GUUAAAUAAAAAGCAA----CGCAAAUAUUAAUAAGCAGCGGAAACAUCUGGAAAACUCCGAGCAUGGUCAGUA------AAAAGGGACAGACUU ............((..----(((...............)))........((((....)))).))..((((.((.------.......)).)))). ( -9.76) >consensus AUUAAACAAAUCAUAGCGU_UGUAGACAACAAAUCGCCACUAGAAUAACUGGAAAAAAGCGAACAUGGUUAGUACUAGACAAACGCGACGCACUU ...............((((.(((.(....)........(((((......((........)).......)))))...........))))))).... ( -2.24 = -1.56 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:49 2006