| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,892,861 – 13,892,974 |
| Length | 113 |
| Max. P | 0.500000 |
| Location | 13,892,861 – 13,892,974 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 80.76 |
| Mean single sequence MFE | -32.83 |
| Consensus MFE | -20.90 |
| Energy contribution | -22.27 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13892861 113 - 23771897 GAAAGAGCCCAGAAACUGGAGACAGCCUCAGAGUACAAACGGUCUGGUCUGGGAAGACACGAUCUCAAUCCGGAUCAACGUGCGCAGAUCUUAGGCGAGCAACAACA---AGAGGA- ...............(((....)))((((...........(((((((..(((((........)))))..)))))))...((.(((.........))).)).......---.)))).- ( -31.40) >DroGri_CAF1 1693 117 - 1 GAGCGUGCACGAAAACUGGCCGCGACAACGGAGCAUAAGAAAGCCGGCCUGGGCAGGCACGAUCUCAAUCCGGAGCAGCGCGCUCAGCUGCUGGGUGAGUCACAGGCGAAAAAGAAC ..((((((.(.....(.(((((((....))..((........))))))).)....)))))((.((((.(((..((((((.......)))))))))))))))....)).......... ( -36.60) >DroSec_CAF1 1671 113 - 1 GAUAGAGCCAAGAAACUGGAGGCAGCCUCAGAGUAUAAAAGGUCUGGUCUGGGAAGACACGAUCUCAAUCCGGAUCAACGUGCACAGCUCUUAGGCGAGCAGAAAAA---AGAGGA- ......(((...........)))..((((...((((....(((((((..(((((........)))))..)))))))...))))...((((......)))).......---.)))).- ( -33.00) >DroSim_CAF1 1663 113 - 1 GAAAGAGCCAAGAAACUGGAGACAGCCUCAGAGUACAAACGGUCUGGUCUGGGAAGACACGAUCUCAAUCCGGAUCAACGUGCACAGCUCUUAGGCGAGCAGAAAAA---AGAGGA- ...............(((....)))((((...((((....(((((((..(((((........)))))..)))))))...))))...((((......)))).......---.)))).- ( -35.90) >DroEre_CAF1 1689 113 - 1 GAAAGAGCCAAGAAACUGGAGACGGCAUCAGAGUACAAACGCUCUGGUCUGGGAAGGCACGAUCUCAAUCCCGAUCAACGUGCACAGCUGCUAGGCGAGCAAAAAAA---AGAGGA- ......(((.((...(((....(((.((((((((......))))))))))).....((((((((........))))...)))).)))...)).)))...........---......- ( -30.90) >DroYak_CAF1 1680 113 - 1 GAGAGAGCCAAGAAACUGGAGACAGCCUCGGAGUACAAACGGUCUGGUUUGGGAAGGCACGAUCUAAAUCCCGAUCAACGUGCAGAACUUCUAGGCGAGCAAAAGAA---AGAGGA- ..(...(((..((..(((....)))..))(((((.(((((......))))).....((((((((........))))...))))...)))))..)))...).......---......- ( -29.20) >consensus GAAAGAGCCAAGAAACUGGAGACAGCCUCAGAGUACAAACGGUCUGGUCUGGGAAGACACGAUCUCAAUCCGGAUCAACGUGCACAGCUCCUAGGCGAGCAAAAAAA___AGAGGA_ ......(((..((..(((....)))..))...((((....(((((((..(((((........)))))..)))))))...))))..........)))..................... (-20.90 = -22.27 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:10 2006