Locus 5066

Sequence ID 3L_DroMel_CAF1
Location 13,892,615 – 13,892,705
Length 90
Max. P 0.769010
window8029

overview

Window 9

Location 13,892,615 – 13,892,705
Length 90
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 73.99
Mean single sequence MFE -20.67
Consensus MFE -11.22
Energy contribution -11.30
Covariance contribution 0.08
Combinations/Pair 1.35
Mean z-score -1.69
Structure conservation index 0.54
SVM decision value 0.52
SVM RNA-class probability 0.769010
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13892615 90 + 23771897
AAUAUAA------UAAUUUCUAGGCACUGUAAAUUUUGCUUACGCAAGUCCUUCGUCUUGAGGGCUGCUCUCUCUUGUAUGGCGGCAUUUGCCUCC
.((((((------.......((((((..........)))))).(((.((((((......)))))))))......))))))((.(((....))).)) ( -21.90)
>DroSec_CAF1 1425 90 + 1
AAUAUAA------UAAUUUCUAGGCACUAUCAAUUUUGCUUACGCAAGUCCUUCGUCUUAAGUGCCGCUUUCUCUUGUAUGGCGGCAUUUGCCUCC
.......------........((((.........(((((....)))))...........((((((((((..(....)...)))))))))))))).. ( -23.60)
>DroSim_CAF1 1417 90 + 1
AAUAUAA------UAAUUUCUAGGCACUAUCAAUUUUGCUUACGCAAGUCCUUCGUCUUAAGUGCUGCUUUCUCUUGUAUGGCGGCAUUUGCCUCC
.......------........((((.........(((((....)))))...........((((((((((..(....)...)))))))))))))).. ( -21.40)
>DroEre_CAF1 1443 90 + 1
AGUUUCA------CUACUUUGGGGUACAAUAAUUUUUUCUUACGCAAAUCCUUCGUUUUAAGGGCUGCUUUCUCUUGUAUGGCGGCAUUUGCAUCC
..(..((------......))..)...................((((((((((......))))((((((..(....)...)))))))))))).... ( -17.60)
>DroYak_CAF1 1435 89 + 1
AAUUUGA-------AAUUCUAAGGUACUCUCAUGUUUGCUUACGCAAAUCCUUCGUCUUAAGGGCCGCUUUUUCUUGUAUGGCGGCAUUUGCAUCC
.......-------.......(((((..(....)..)))))..((((((((((......))))((((((...........)))))))))))).... ( -20.80)
>DroMoj_CAF1 1435 95 + 1
UAUAUAAGUAAUCCUAUUUCAAGGAAUCAA-GGAGAUAAAUACCUAAAUUCUUGGUCUUGCUGGCAGCCUGUGCCUGGAGUGCAGCAUUUGAUUCU
...........((((......))))..(((-(((..((......))..))))))(((.(((((.((.((.......))..)))))))...)))... ( -18.70)
>consensus
AAUAUAA______UAAUUUCUAGGCACUAUCAAUUUUGCUUACGCAAAUCCUUCGUCUUAAGGGCUGCUUUCUCUUGUAUGGCGGCAUUUGCCUCC
...........................................((((((((((......))))((((((..(....)...)))))))))))).... (-11.22 = -11.30 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:09 2006