Locus 5063

Sequence ID 3L_DroMel_CAF1
Location 13,873,637 – 13,873,733
Length 96
Max. P 0.500000
window8025

overview

Window 5

Location 13,873,637 – 13,873,733
Length 96
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 82.22
Mean single sequence MFE -34.17
Consensus MFE -23.97
Energy contribution -24.74
Covariance contribution 0.78
Combinations/Pair 1.14
Mean z-score -1.34
Structure conservation index 0.70
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13873637 96 - 23771897
UCAUCGACGGCUUCUAUUAUGGG---------------CCACCGCAAGACUGACUCCAUACACUCGAAUUCGAGCAGCGGAGCGGGAUCACAGUUCUACUGCGAACUAAAC
..(((...(((((.......)))---------------))..(....).(((.((((.....((((....))))....))))))))))...(((((......))))).... ( -23.80)
>DroVir_CAF1 48885 111 - 1
UCGUCGACGGCCUCCAUAAUGGGCAGUGCUGGACAUGGACAUCGCAAGACUGACUCAAUACACUCCAAUUCGAGCAGCGGGGCCGGCUCGCAGUUCUAUUGUGAGCUAAAC
.......((((((((.....))((..((((.((..((((((((....)).))...........))))..)).)))))).))))))(((((((((...)))))))))..... ( -36.90)
>DroPse_CAF1 37427 96 - 1
UCGUCGACGGCCUCCAUCAUAGG---------------CCACCGCAAGACUGACUCCAUUCACUCCAAUUCGAGCAGCGGGGCCGGCUCGCAGUUCUACUGUGAGCUGAAC
..(((...(((((.......)))---------------)).((((..((.((....)).)).(((......)))..)))))))((((((((((.....))))))))))... ( -37.30)
>DroMoj_CAF1 45059 111 - 1
UCGUCGACGGCCUCGAUUAUGGGCAGCGCCGGGCAUGGCCAUCGCAAGACUGACUCCAUACACUCCAAUUCGAGCAGCGGAGCUGGCUCGCAGUUCUACUGUGAGCUGAAC
...(((.((((..((..(((((((((.((((....))))..((....))))).).)))))..(((......)))...))..))))((((((((.....))))))))))).. ( -38.20)
>DroAna_CAF1 34384 96 - 1
UCGUCGGCUGCCUCCAUAAUGGG---------------CCACCGCAAGACUGACUCCAUCCACUCGAACUCGAGCAGUGGCGCCGGAUCGCAGUUCUACUGUGAGCUGAAU
...(((((...........((((---------------(((((....)..............((((....))))..))))).)))..((((((.....))))))))))).. ( -31.50)
>DroPer_CAF1 29842 96 - 1
UCGUCGACGGCCUCCAUCAUAGG---------------CCACCGCAAGACUGACUCCAUUCACUCCAAUUCGAGCAGCGGGGCCGGCUCGCAGUUCUACUGUGAGCUGAAC
..(((...(((((.......)))---------------)).((((..((.((....)).)).(((......)))..)))))))((((((((((.....))))))))))... ( -37.30)
>consensus
UCGUCGACGGCCUCCAUAAUGGG_______________CCACCGCAAGACUGACUCCAUACACUCCAAUUCGAGCAGCGGGGCCGGCUCGCAGUUCUACUGUGAGCUGAAC
.......(((((((............................(....).(((.(((...............)))))).)))))))((((((((.....))))))))..... (-23.97 = -24.74 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:05 2006