| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,870,024 – 13,870,128 |
| Length | 104 |
| Max. P | 0.824075 |
| Location | 13,870,024 – 13,870,128 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 81.98 |
| Mean single sequence MFE | -35.10 |
| Consensus MFE | -24.92 |
| Energy contribution | -26.73 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.824075 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13870024 104 + 23771897 GUGAGUGUGUGGCAGAGAGAGUGGGAAAUGGGCGAAGGGCACU-AGUGUGAGUGAGGGCCCGACACGUUGUUGCAUUUUCGCCUGCCUGAGAAUAGCGCUCGAAA .(((((((..(((((.(((((((.((....((((..((((.((-..........)).))))....)))).)).)))))))..)))))........)))))))... ( -35.10) >DroSec_CAF1 31254 104 + 1 GUGAGUGUGUGGCAGAGAGAGUGGGAAAUGGGCGAAGGGAACU-AGUGUGAGUAAGGGCCCGACACGUUGUUGCAUUCUCGCCUGCCUGAGAAAAACGCUCGAAA .(((((((..(((((.(((((((.((....((((..(((..((-..........))..)))....)))).)).)))))))..)))))........)))))))... ( -36.20) >DroSim_CAF1 22395 104 + 1 GUGAGUGUGUGUCAGAGAGAGUGGGAAAUGGGCGAAGGGCACU-AGUGUGAGUGAGGGCCCGACACGUUGUUGCAUUCUCGCCUGCCUGAGAAAAGCGCUCAAAA .(((((((.(.((((..((.(((((((..((((......((((-......))))...))))(((.....)))...)))))))))..)))).)...)))))))... ( -36.50) >DroEre_CAF1 38288 104 + 1 GUGAGUGUGUGGCAGAGAGAGUGGGAAACUGGCGAAGGGCACU-AGUGUGAGUGAGGGCCCGACACGUUGUUGCAUUCUCGCCUGCCUGAGAAAAGCGCUCGAAA .(((((((..(((((.(((((((.((....((((..((((.((-..........)).))))....)))).)).)))))))..)))))........)))))))... ( -37.70) >DroWil_CAF1 47914 80 + 1 AUGGGUGCGAGCAAGGGGGAGC---AUACUGG-------AAGUAGGUGUGAGUAUGAG--CGACACGUUGUUGCAUUUCCU-------------AGCGCACAAAA ....(((((....(((..(..(---(((((..-------.....)))))).......(--((((.....))))).)..)))-------------..))))).... ( -25.50) >DroYak_CAF1 33906 104 + 1 GUGAGUGUGCGGCAGAGAGAGUGGGAAACGGGCGAAGGGCACU-AGUGUGAGUGAGGGCCCGACACGUUGUUGCAUUCUCGCCUGCCUGAGAAAAGCGCUCAAAA .(((((((.((((((.(((((((.((((((......((((.((-..........)).))))....)))).)).)))))))..))))).)......)))))))... ( -39.60) >consensus GUGAGUGUGUGGCAGAGAGAGUGGGAAACGGGCGAAGGGCACU_AGUGUGAGUGAGGGCCCGACACGUUGUUGCAUUCUCGCCUGCCUGAGAAAAGCGCUCAAAA .(((((((..(((((.(((((((.((((((......((((.((...........)).))))....)))).)).)))))))..)))))........)))))))... (-24.92 = -26.73 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:04 2006