Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 13,868,150 – 13,868,244 |
Length | 94 |
Max. P | 0.993823 |
Location | 13,868,150 – 13,868,244 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 88.21 |
Mean single sequence MFE | -23.28 |
Consensus MFE | -21.42 |
Energy contribution | -21.92 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.44 |
Structure conservation index | 0.92 |
SVM decision value | 2.43 |
SVM RNA-class probability | 0.993823 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13868150 94 + 23771897 -----------------ACAAAAAAAAAUUGUUGAAGGAGGAAAAUCGUUUCACACAUUACACACAACAACACGGAAGAGGCAGAAUUGCCCUGUCUCUUUCCUUCUUUCG -----------------................((((((((......((.....)).................(((((((((((.......))))))))))))))))))). ( -23.50) >DroSec_CAF1 29449 93 + 1 -----------------CCAAA-AAAAAUUGUUGAAGGAGGAAAAUCGUUUCACACAUUACACACAACAACACGGAAGAGGCAGAAUUGCCCUGUCUCUUUCCUUCUUUCG -----------------.....-..........((((((((......((.....)).................(((((((((((.......))))))))))))))))))). ( -23.50) >DroSim_CAF1 20594 93 + 1 -----------------CCAAA-AAAAAUUGUUGAAGGAGGAAAAUCGUUUCACACAUUACACACAACAACACGGAAGAGGCAGAAUUGCCCUGUCUCUUUCCUUCUUUCG -----------------.....-..........((((((((......((.....)).................(((((((((((.......))))))))))))))))))). ( -23.50) >DroEre_CAF1 36347 92 + 1 -----------------CCAAA--AAAAUUGUUGAAGGAGGAAAAUCGUUUCACACAUUACACACAACAACACGGAAGAGGCAGAGUUGCCCUGUCUCUUUCCUUCUUUCG -----------------.....--.........((((((((......((.....)).................(((((((((((.......))))))))))))))))))). ( -23.50) >DroYak_CAF1 32051 92 + 1 -----------------CCAAA--AAAAUUGUUGAAGGAGGAAAAUCGUUUCACACAUUACACACAACAACACGGAAGAGGCAGAGUUGCCCUGUCUCUUUCCUUCUUUCG -----------------.....--.........((((((((......((.....)).................(((((((((((.......))))))))))))))))))). ( -23.50) >DroAna_CAF1 29587 110 + 1 CCGAAAAAAAAAACAAGCAAAA-GGACAUCAUCGAAGGAGGAAAAUCGUUUCGCACAUUACACACAACAACAGGGAAGAGCCAGAGUUGUCCUGUCUCUCUCCUUCUUGCG ................((((..-.((.....))(((((((((((....)))).........(((..(((((..((.....))...)))))..)))....))))))))))). ( -22.20) >consensus _________________CCAAA_AAAAAUUGUUGAAGGAGGAAAAUCGUUUCACACAUUACACACAACAACACGGAAGAGGCAGAAUUGCCCUGUCUCUUUCCUUCUUUCG .................................((((((((......((.....)).................(((((((((((.......))))))))))))))))))). (-21.42 = -21.92 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:03 2006